Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL161756.3-201ENST00000641216 2071 ntBASIC5.77□□□□□ -1.49
SDC1P18827 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
SDC1P18827 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.77□□□□□ -1.49
SDC1P18827 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.77□□□□□ -1.49
SDC1P18827 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.77□□□□□ -1.49
SDC1P18827 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.77□□□□□ -1.49
SDC1P18827 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SDC1P18827 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 AC005224.3-201ENST00000584683 2140 ntBASIC5.77□□□□□ -1.49
SDC1P18827 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.77□□□□□ -1.49
SDC1P18827 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 SAMMSON-210ENST00000641260 1308 ntBASIC5.76□□□□□ -1.49
SDC1P18827 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 AL359955.1-201ENST00000455242 3275 ntBASIC5.76□□□□□ -1.49
SDC1P18827 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 ZNF402P-201ENST00000404435 3100 ntBASIC5.76□□□□□ -1.49
SDC1P18827 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 RNA5SP156-201ENST00000410250 110 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AC245096.1-201ENST00000413104 546 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AL096829.1-201ENST00000413677 457 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC5.76□□□□□ -1.49
SDC1P18827 PSMD10P2-201ENST00000432890 672 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AC073410.1-201ENST00000435125 589 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AC010086.1-201ENST00000437359 1052 ntBASIC5.76□□□□□ -1.49
SDC1P18827 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 ACA64.4-201ENST00000459070 127 ntBASIC5.76□□□□□ -1.49
SDC1P18827 snoU13.29-201ENST00000459370 104 ntBASIC5.76□□□□□ -1.49
SDC1P18827 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 HMGN1P16-201ENST00000508308 283 ntBASIC5.76□□□□□ -1.49
SDC1P18827 SNX18P25-201ENST00000510539 758 ntBASIC5.76□□□□□ -1.49
SDC1P18827 ZNF519P4-201ENST00000514008 125 ntBASIC5.76□□□□□ -1.49
SDC1P18827 RNU2-45P-201ENST00000516068 187 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AC113191.1-201ENST00000517759 403 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.76□□□□□ -1.49
SDC1P18827 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.76□□□□□ -1.49
SDC1P18827 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.76□□□□□ -1.49
SDC1P18827 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 NPM1P42-201ENST00000560329 862 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.76□□□□□ -1.49
SDC1P18827 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.76□□□□□ -1.49
SDC1P18827 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 AC016590.3-201ENST00000611171 753 ntBASIC5.76□□□□□ -1.49
SDC1P18827 uc_338.26-201ENST00000612659 160 ntBASIC5.76□□□□□ -1.49
SDC1P18827 AL352984.2-202ENST00000613699 155 ntBASIC5.76□□□□□ -1.49
SDC1P18827 MIR6823-201ENST00000622118 61 ntBASIC5.76□□□□□ -1.49
SDC1P18827 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SDC1P18827 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.76□□□□□ -1.49
SDC1P18827 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.76□□□□□ -1.49
SDC1P18827 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.75□□□□□ -1.49
SDC1P18827 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.75□□□□□ -1.49
SDC1P18827 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 OR10R3P-201ENST00000361688 942 ntBASIC5.75□□□□□ -1.49
SDC1P18827 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 PSMA6P1-201ENST00000400275 741 ntBASIC5.75□□□□□ -1.49
SDC1P18827 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 OR2W4P-201ENST00000406496 926 ntBASIC5.75□□□□□ -1.49
SDC1P18827 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 RNA5SP198-201ENST00000410376 127 ntBASIC5.75□□□□□ -1.49
SDC1P18827 RN7SKP108-201ENST00000411367 328 ntBASIC5.75□□□□□ -1.49
SDC1P18827 MYL6P5-201ENST00000412707 459 ntBASIC5.75□□□□□ -1.49
SDC1P18827 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.75□□□□□ -1.49
SDC1P18827 RPS7P8-201ENST00000418311 581 ntBASIC5.75□□□□□ -1.49
SDC1P18827 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 VN1R20P-201ENST00000425215 966 ntBASIC5.75□□□□□ -1.49
SDC1P18827 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 ZNF619P1-201ENST00000446539 752 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms