Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.13■□□□□ 0.49
TIMP4Q99727 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TIMP4Q99727 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TIMP4Q99727 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TIMP4Q99727 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TIMP4Q99727 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.12■□□□□ 0.49
TIMP4Q99727 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TIMP4Q99727 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.12■□□□□ 0.49
TIMP4Q99727 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.12■□□□□ 0.49
TIMP4Q99727 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.12■□□□□ 0.49
TIMP4Q99727 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.12■□□□□ 0.49
TIMP4Q99727 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 AC023632.3-201ENST00000521633 145 ntBASIC18.12■□□□□ 0.49
TIMP4Q99727 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.12■□□□□ 0.49
TIMP4Q99727 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TIMP4Q99727 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.12■□□□□ 0.49
TIMP4Q99727 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.12■□□□□ 0.49
TIMP4Q99727 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.12■□□□□ 0.49
TIMP4Q99727 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.12■□□□□ 0.49
TIMP4Q99727 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TIMP4Q99727 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TIMP4Q99727 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.11■□□□□ 0.49
TIMP4Q99727 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TIMP4Q99727 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 AL158211.5-201ENST00000623583 2518 ntBASIC18.11■□□□□ 0.49
TIMP4Q99727 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.11■□□□□ 0.49
TIMP4Q99727 UBE2SP1-201ENST00000450587 669 ntBASIC18.11■□□□□ 0.49
TIMP4Q99727 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.11■□□□□ 0.49
TIMP4Q99727 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.11■□□□□ 0.49
TIMP4Q99727 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 FAM197Y4-202ENST00000622692 608 ntBASIC18.11■□□□□ 0.49
TIMP4Q99727 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.11■□□□□ 0.49
TIMP4Q99727 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
TIMP4Q99727 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TIMP4Q99727 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
TIMP4Q99727 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TIMP4Q99727 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TIMP4Q99727 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TIMP4Q99727 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.1■□□□□ 0.49
TIMP4Q99727 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.1■□□□□ 0.49
TIMP4Q99727 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.1■□□□□ 0.49
TIMP4Q99727 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.49
TIMP4Q99727 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.1■□□□□ 0.49
TIMP4Q99727 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.1■□□□□ 0.49
TIMP4Q99727 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.1■□□□□ 0.49
TIMP4Q99727 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TIMP4Q99727 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
TIMP4Q99727 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TIMP4Q99727 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.1■□□□□ 0.49
TIMP4Q99727 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.1■□□□□ 0.49
TIMP4Q99727 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.1■□□□□ 0.49
TIMP4Q99727 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TIMP4Q99727 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.09■□□□□ 0.49
TIMP4Q99727 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.09■□□□□ 0.49
TIMP4Q99727 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TIMP4Q99727 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TIMP4Q99727 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.09■□□□□ 0.49
TIMP4Q99727 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms