Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 NTF6A-201ENST00000591175 560 ntBASIC15.77■□□□□ 0.12
CLRN3Q8NCR9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 AL162727.3-201ENST00000635661 2787 ntBASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CLRN3Q8NCR9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 AIRN-201ENST00000601203 4374 ntBASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CLRN3Q8NCR9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.75■□□□□ 0.11
CLRN3Q8NCR9 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 U85056.1-201ENST00000616429 682 ntBASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 AL031602.1-201ENST00000633169 911 ntBASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLRN3Q8NCR9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms