Protein–RNA interactions for Protein: Q12824

SMARCB1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, humanhuman

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1Q12824 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.77■□□□□ 0.92
SMARCB1Q12824 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCB1Q12824 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.77■□□□□ 0.92
SMARCB1Q12824 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.77■□□□□ 0.92
SMARCB1Q12824 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.77■□□□□ 0.92
SMARCB1Q12824 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.77■□□□□ 0.92
SMARCB1Q12824 LINC01023-201ENST00000606054 436 ntBASIC20.77■□□□□ 0.92
SMARCB1Q12824 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.77■□□□□ 0.92
SMARCB1Q12824 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.77■□□□□ 0.92
SMARCB1Q12824 AL031985.4-201ENST00000642138 673 ntBASIC20.77■□□□□ 0.92
SMARCB1Q12824 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCB1Q12824 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SMARCB1Q12824 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMARCB1Q12824 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.91
SMARCB1Q12824 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.77■□□□□ 0.91
SMARCB1Q12824 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SMARCB1Q12824 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SMARCB1Q12824 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SMARCB1Q12824 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCB1Q12824 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCB1Q12824 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCB1Q12824 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCB1Q12824 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.76■□□□□ 0.91
SMARCB1Q12824 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.76■□□□□ 0.91
SMARCB1Q12824 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCB1Q12824 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.75■□□□□ 0.91
SMARCB1Q12824 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.75■□□□□ 0.91
SMARCB1Q12824 GABARAPL3-202ENST00000624044 1851 ntBASIC20.75■□□□□ 0.91
SMARCB1Q12824 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SMARCB1Q12824 UNC93B2-201ENST00000285383 730 ntBASIC20.75■□□□□ 0.91
SMARCB1Q12824 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 AC211429.1-201ENST00000415277 523 ntBASIC20.75■□□□□ 0.91
SMARCB1Q12824 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.75■□□□□ 0.91
SMARCB1Q12824 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.75■□□□□ 0.91
SMARCB1Q12824 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.75■□□□□ 0.91
SMARCB1Q12824 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 AC073314.1-201ENST00000568729 2216 ntBASIC20.75■□□□□ 0.91
SMARCB1Q12824 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.75■□□□□ 0.91
SMARCB1Q12824 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCB1Q12824 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.75■□□□□ 0.91
SMARCB1Q12824 TMEM179-206ENST00000616017 1645 ntBASIC20.75■□□□□ 0.91
SMARCB1Q12824 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCB1Q12824 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.74■□□□□ 0.91
SMARCB1Q12824 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.74■□□□□ 0.91
SMARCB1Q12824 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCB1Q12824 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.74■□□□□ 0.91
SMARCB1Q12824 REXO1L10P-201ENST00000615707 1290 ntBASIC20.74■□□□□ 0.91
SMARCB1Q12824 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCB1Q12824 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCB1Q12824 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCB1Q12824 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCB1Q12824 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCB1Q12824 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCB1Q12824 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCB1Q12824 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCB1Q12824 AL162377.1-201ENST00000618844 1793 ntBASIC20.72■□□□□ 0.91
SMARCB1Q12824 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCB1Q12824 MMP23A-201ENST00000234610 1017 ntBASIC20.72■□□□□ 0.91
SMARCB1Q12824 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCB1Q12824 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCB1Q12824 TSPY15P-201ENST00000457163 923 ntBASIC20.72■□□□□ 0.91
SMARCB1Q12824 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 AC131212.4-201ENST00000623606 975 ntBASIC20.72■□□□□ 0.91
SMARCB1Q12824 FSCN1P1-201ENST00000568912 1481 ntBASIC20.72■□□□□ 0.91
SMARCB1Q12824 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.72■□□□□ 0.91
SMARCB1Q12824 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCB1Q12824 FEM1AP1-201ENST00000431297 1995 ntBASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms