Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CX3CL1P78423 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
CX3CL1P78423 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CX3CL1P78423 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CX3CL1P78423 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CX3CL1P78423 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CX3CL1P78423 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.89■□□□□ 0.13
CX3CL1P78423 KRT8P20-201ENST00000423953 1409 ntBASIC15.89■□□□□ 0.13
CX3CL1P78423 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 HLA-G-202ENST00000376815 851 ntBASIC15.89■□□□□ 0.13
CX3CL1P78423 HLA-G-203ENST00000376818 1127 ntBASIC15.89■□□□□ 0.13
CX3CL1P78423 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CX3CL1P78423 AC069152.1-201ENST00000438030 544 ntBASIC15.89■□□□□ 0.13
CX3CL1P78423 AC023632.3-201ENST00000521633 145 ntBASIC15.89■□□□□ 0.13
CX3CL1P78423 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.89■□□□□ 0.13
CX3CL1P78423 AC098934.4-201ENST00000564127 592 ntBASIC15.89■□□□□ 0.13
CX3CL1P78423 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC15.89■□□□□ 0.13
CX3CL1P78423 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.89■□□□□ 0.13
CX3CL1P78423 AC112907.3-201ENST00000577781 2400 ntBASIC15.89■□□□□ 0.13
CX3CL1P78423 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.89■□□□□ 0.13
CX3CL1P78423 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
CX3CL1P78423 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
CX3CL1P78423 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.89■□□□□ 0.13
CX3CL1P78423 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.89■□□□□ 0.13
CX3CL1P78423 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CX3CL1P78423 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.89■□□□□ 0.13
CX3CL1P78423 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.88■□□□□ 0.13
CX3CL1P78423 CRK-204ENST00000574295 1391 ntTSL 5 BASIC15.88■□□□□ 0.13
CX3CL1P78423 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.88■□□□□ 0.13
CX3CL1P78423 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CX3CL1P78423 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC15.88■□□□□ 0.13
CX3CL1P78423 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC15.88■□□□□ 0.13
CX3CL1P78423 SERP1-205ENST00000487153 657 ntTSL 4 BASIC15.88■□□□□ 0.13
CX3CL1P78423 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.88■□□□□ 0.13
CX3CL1P78423 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.88■□□□□ 0.13
CX3CL1P78423 MYC-209ENST00000641252 345 ntBASIC15.88■□□□□ 0.13
CX3CL1P78423 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
CX3CL1P78423 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.88■□□□□ 0.13
CX3CL1P78423 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.88■□□□□ 0.13
CX3CL1P78423 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC15.88■□□□□ 0.13
CX3CL1P78423 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CX3CL1P78423 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CX3CL1P78423 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CX3CL1P78423 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CX3CL1P78423 BX119927.1-201ENST00000636596 1552 ntBASIC15.87■□□□□ 0.13
CX3CL1P78423 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.87■□□□□ 0.13
CX3CL1P78423 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC15.87■□□□□ 0.13
CX3CL1P78423 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CX3CL1P78423 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CX3CL1P78423 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CX3CL1P78423 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
CX3CL1P78423 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CX3CL1P78423 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC15.87■□□□□ 0.13
CX3CL1P78423 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC15.87■□□□□ 0.13
CX3CL1P78423 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.87■□□□□ 0.13
CX3CL1P78423 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC15.87■□□□□ 0.13
CX3CL1P78423 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC15.87■□□□□ 0.13
CX3CL1P78423 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
CX3CL1P78423 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CX3CL1P78423 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CX3CL1P78423 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CX3CL1P78423 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CX3CL1P78423 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CX3CL1P78423 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CX3CL1P78423 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms