Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.17■□□□□ 0.82
HOXC11O43248 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC11O43248 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.17■□□□□ 0.82
HOXC11O43248 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.17■□□□□ 0.82
HOXC11O43248 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC11O43248 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
HOXC11O43248 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC11O43248 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC11O43248 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC11O43248 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC11O43248 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.17■□□□□ 0.82
HOXC11O43248 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC11O43248 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC11O43248 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
HOXC11O43248 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
HOXC11O43248 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.16■□□□□ 0.82
HOXC11O43248 KRT18P21-201ENST00000515767 1272 ntBASIC20.16■□□□□ 0.82
HOXC11O43248 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.16■□□□□ 0.82
HOXC11O43248 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.16■□□□□ 0.82
HOXC11O43248 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.16■□□□□ 0.82
HOXC11O43248 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 BX119927.1-201ENST00000636596 1552 ntBASIC20.16■□□□□ 0.82
HOXC11O43248 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HOXC11O43248 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HOXC11O43248 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
HOXC11O43248 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 MIR1238-201ENST00000408483 83 ntBASIC20.15■□□□□ 0.82
HOXC11O43248 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.15■□□□□ 0.82
HOXC11O43248 FITM1-202ENST00000559294 800 ntBASIC20.15■□□□□ 0.82
HOXC11O43248 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.15■□□□□ 0.82
HOXC11O43248 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.15■□□□□ 0.82
HOXC11O43248 AC145285.6-201ENST00000604632 637 ntBASIC20.15■□□□□ 0.82
HOXC11O43248 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.15■□□□□ 0.82
HOXC11O43248 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.15■□□□□ 0.82
HOXC11O43248 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.15■□□□□ 0.82
HOXC11O43248 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.15■□□□□ 0.82
HOXC11O43248 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 KRT8P9-201ENST00000558927 1449 ntBASIC20.15■□□□□ 0.82
HOXC11O43248 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.15■□□□□ 0.82
HOXC11O43248 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
HOXC11O43248 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
HOXC11O43248 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
HOXC11O43248 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HOXC11O43248 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
HOXC11O43248 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.14■□□□□ 0.82
HOXC11O43248 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC11O43248 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.14■□□□□ 0.81
HOXC11O43248 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.14■□□□□ 0.81
HOXC11O43248 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC11O43248 FSCN1P1-201ENST00000568912 1481 ntBASIC20.14■□□□□ 0.81
HOXC11O43248 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC11O43248 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC11O43248 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HOXC11O43248 RCN1P1-201ENST00000400413 996 ntBASIC20.14■□□□□ 0.81
HOXC11O43248 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
HOXC11O43248 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.14■□□□□ 0.81
HOXC11O43248 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.14■□□□□ 0.81
HOXC11O43248 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
HOXC11O43248 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HOXC11O43248 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HOXC11O43248 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC11O43248 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.13■□□□□ 0.81
HOXC11O43248 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
HOXC11O43248 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.13■□□□□ 0.81
HOXC11O43248 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.13■□□□□ 0.81
HOXC11O43248 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC11O43248 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.13■□□□□ 0.81
HOXC11O43248 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC11O43248 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC11O43248 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC11O43248 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
HOXC11O43248 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
HOXC11O43248 MESTP1-201ENST00000404287 994 ntBASIC20.13■□□□□ 0.81
HOXC11O43248 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.13■□□□□ 0.81
HOXC11O43248 MIR1224-201ENST00000408193 85 ntBASIC20.13■□□□□ 0.81
HOXC11O43248 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.13■□□□□ 0.81
HOXC11O43248 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.13■□□□□ 0.81
HOXC11O43248 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.13■□□□□ 0.81
HOXC11O43248 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC11O43248 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.13■□□□□ 0.81
HOXC11O43248 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HOXC11O43248 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
HOXC11O43248 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms