Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH5O43196 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC26.6■■□□□ 1.85
MSH5O43196 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC26.6■■□□□ 1.85
MSH5O43196 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
MSH5O43196 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
MSH5O43196 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH5O43196 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC26.6■■□□□ 1.85
MSH5O43196 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC26.6■■□□□ 1.85
MSH5O43196 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH5O43196 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC26.59■■□□□ 1.85
MSH5O43196 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
MSH5O43196 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC26.59■■□□□ 1.85
MSH5O43196 PTP4A2-201ENST00000457805 1032 ntTSL 2 BASIC26.59■■□□□ 1.85
MSH5O43196 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH5O43196 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC26.59■■□□□ 1.85
MSH5O43196 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC26.58■■□□□ 1.85
MSH5O43196 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
MSH5O43196 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 GOLGA2P6-201ENST00000340929 2049 ntBASIC26.58■■□□□ 1.85
MSH5O43196 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
MSH5O43196 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
MSH5O43196 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 KRT18P68-201ENST00000392293 1000 ntBASIC26.58■■□□□ 1.85
MSH5O43196 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC26.58■■□□□ 1.85
MSH5O43196 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC26.58■■□□□ 1.85
MSH5O43196 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC26.58■■□□□ 1.85
MSH5O43196 AL445228.2-201ENST00000605589 952 ntBASIC26.58■■□□□ 1.85
MSH5O43196 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
MSH5O43196 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC26.58■■□□□ 1.85
MSH5O43196 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
MSH5O43196 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC26.58■■□□□ 1.85
MSH5O43196 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MSH5O43196 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MSH5O43196 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.84
MSH5O43196 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MSH5O43196 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.84
MSH5O43196 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
MSH5O43196 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH5O43196 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH5O43196 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH5O43196 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC26.57■■□□□ 1.84
MSH5O43196 RCN1P1-201ENST00000400413 996 ntBASIC26.57■■□□□ 1.84
MSH5O43196 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC26.57■■□□□ 1.84
MSH5O43196 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
MSH5O43196 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC26.57■■□□□ 1.84
MSH5O43196 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC26.57■■□□□ 1.84
MSH5O43196 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC26.57■■□□□ 1.84
MSH5O43196 AC079791.1-201ENST00000605356 973 ntBASIC26.57■■□□□ 1.84
MSH5O43196 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC26.57■■□□□ 1.84
MSH5O43196 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC26.57■■□□□ 1.84
MSH5O43196 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC26.57■■□□□ 1.84
MSH5O43196 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH5O43196 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH5O43196 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
MSH5O43196 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC26.57■■□□□ 1.84
MSH5O43196 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC26.56■■□□□ 1.84
MSH5O43196 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC26.56■■□□□ 1.84
MSH5O43196 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC26.56■■□□□ 1.84
MSH5O43196 AC112220.4-201ENST00000604982 1263 ntBASIC26.56■■□□□ 1.84
MSH5O43196 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
MSH5O43196 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC26.56■■□□□ 1.84
MSH5O43196 AL049637.2-201ENST00000641778 930 ntBASIC26.56■■□□□ 1.84
MSH5O43196 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
MSH5O43196 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC26.56■■□□□ 1.84
MSH5O43196 CRK-204ENST00000574295 1391 ntTSL 5 BASIC26.56■■□□□ 1.84
MSH5O43196 TUB-203ENST00000534099 1759 ntTSL 2 BASIC26.56■■□□□ 1.84
MSH5O43196 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH5O43196 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC26.55■■□□□ 1.84
MSH5O43196 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH5O43196 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC26.55■■□□□ 1.84
MSH5O43196 AC098818.2-201ENST00000564925 2320 ntBASIC26.55■■□□□ 1.84
MSH5O43196 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms