Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL6A5A8TX70 AC140113.2-201ENST00000604370 208 ntBASIC15.43■□□□□ 0.06
COL6A5A8TX70 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 AC011298.2-201ENST00000617989 482 ntBASIC15.43■□□□□ 0.06
COL6A5A8TX70 AC131212.4-201ENST00000623606 975 ntBASIC15.43■□□□□ 0.06
COL6A5A8TX70 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL6A5A8TX70 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL6A5A8TX70 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL6A5A8TX70 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL6A5A8TX70 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL6A5A8TX70 AC004980.1-204ENST00000429707 299 ntBASIC15.43■□□□□ 0.06
COL6A5A8TX70 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC15.43■□□□□ 0.06
COL6A5A8TX70 AC016734.2-201ENST00000624325 1377 ntBASIC15.43■□□□□ 0.06
COL6A5A8TX70 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 TSPY12P-201ENST00000421279 868 ntBASIC15.42■□□□□ 0.06
COL6A5A8TX70 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 AC091304.2-201ENST00000564639 760 ntBASIC15.42■□□□□ 0.06
COL6A5A8TX70 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 KRT18P1-202ENST00000452408 1331 ntBASIC15.42■□□□□ 0.06
COL6A5A8TX70 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A5A8TX70 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC15.42■□□□□ 0.06
COL6A5A8TX70 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 IL9RP2-201ENST00000423948 1312 ntBASIC15.41■□□□□ 0.06
COL6A5A8TX70 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 AC011498.5-201ENST00000592027 486 ntBASIC15.41■□□□□ 0.06
COL6A5A8TX70 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC15.41■□□□□ 0.06
COL6A5A8TX70 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A5A8TX70 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 AL645929.1-201ENST00000420084 975 ntBASIC15.4■□□□□ 0.06
COL6A5A8TX70 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 PMS2P2-201ENST00000425039 1128 ntBASIC15.4■□□□□ 0.06
COL6A5A8TX70 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 LINC01311-201ENST00000565162 1445 ntBASIC15.4■□□□□ 0.06
COL6A5A8TX70 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 Z85996.1-201ENST00000494644 937 ntBASIC15.4■□□□□ 0.06
COL6A5A8TX70 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A5A8TX70 GCSHP2-201ENST00000560971 527 ntBASIC15.4■□□□□ 0.06
COL6A5A8TX70 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A5A8TX70 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms