Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 AL355075.4-201ENST00000554988 638 ntBASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAV40A0A0B4J280 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 ECEL1P3-201ENST00000427961 737 ntBASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 AC073195.1-201ENST00000607241 877 ntBASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 REXO1L12P-201ENST00000622156 912 ntBASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAV40A0A0B4J280 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 AC116351.2-201ENST00000606540 1585 ntBASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 AP003071.4-201ENST00000562276 1284 ntBASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRAV40A0A0B4J280 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.17
TRAV40A0A0B4J280 PHGDH-210ENST00000641115 1638 ntBASIC16.08■□□□□ 0.17
TRAV40A0A0B4J280 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV40A0A0B4J280 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.08■□□□□ 0.17
TRAV40A0A0B4J280 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
TRAV40A0A0B4J280 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRAV40A0A0B4J280 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 TSPY15P-201ENST00000457163 923 ntBASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV40A0A0B4J280 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms