Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC131392.1-201ENST00000506490 633 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 SETP21-201ENST00000514799 892 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 SCARNA1-201ENST00000517138 166 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AP003102.1-201ENST00000525638 661 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC124891.1-201ENST00000536322 519 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 RN7SL208P-201ENST00000577964 296 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 SYPL1P2-201ENST00000582878 727 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC015818.6-201ENST00000584274 634 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC119501.1-201ENST00000603646 475 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AL356986.1-201ENST00000604085 341 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 BNIP3P19-201ENST00000605397 577 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC025171.4-201ENST00000607250 1047 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AL391834.1-201ENST00000609609 560 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AL589743.6-201ENST00000611025 117 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 AC009032.1-201ENST00000617574 431 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 MIR6823-201ENST00000622118 61 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 SNX18P10-201ENST00000625014 519 ntBASIC6.62□□□□□ -1.35
DKK3Q9UBP4 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
DKK3Q9UBP4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 MTND4P9-201ENST00000507819 1346 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 TMCC1P1-201ENST00000518897 1980 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC005522.1-201ENST00000395416 346 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 RPL5P20-201ENST00000403848 896 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 Z85994.2-201ENST00000434327 452 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 EIF5AP4-201ENST00000441206 465 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC098818.1-201ENST00000478593 252 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 RPL19P11-201ENST00000495944 589 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 HAUS1P1-201ENST00000505275 832 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 RNU6-1334P-201ENST00000516032 105 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 RNA5SP473-201ENST00000516402 125 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AP001000.1-201ENST00000526843 742 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 OR4A13P-201ENST00000529316 942 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 MIR4420-201ENST00000583944 77 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 NDUFB9P1-201ENST00000604683 510 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 MIR6861-201ENST00000618657 64 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC089999.3-201ENST00000622440 577 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 AC006927.4-201ENST00000639187 543 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 TATDN2P3-201ENST00000452855 3665 ntBASIC6.61□□□□□ -1.35
DKK3Q9UBP4 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
DKK3Q9UBP4 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms