Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC130304.1-201ENST00000622942 2385 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
FOXA1P55317 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.82□□□□□ -1.48
FOXA1P55317 LINC01613-201ENST00000561476 2780 ntBASIC5.82□□□□□ -1.48
FOXA1P55317 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
FOXA1P55317 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.81□□□□□ -1.48
FOXA1P55317 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
FOXA1P55317 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
FOXA1P55317 AL355834.1-201ENST00000556602 3965 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
FOXA1P55317 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.81□□□□□ -1.48
FOXA1P55317 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.81□□□□□ -1.48
FOXA1P55317 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.81□□□□□ -1.48
FOXA1P55317 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.81□□□□□ -1.48
FOXA1P55317 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
FOXA1P55317 RNA5SP156-201ENST00000410250 110 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 MYL6P5-201ENST00000412707 459 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.81□□□□□ -1.48
FOXA1P55317 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.81□□□□□ -1.48
FOXA1P55317 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 VN1R20P-201ENST00000425215 966 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
FOXA1P55317 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.81□□□□□ -1.48
FOXA1P55317 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.81□□□□□ -1.48
FOXA1P55317 SNX18P25-201ENST00000510539 758 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.81□□□□□ -1.48
FOXA1P55317 snoU109.5-201ENST00000516231 132 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 OR7E158P-201ENST00000524483 910 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 BMS1P16-201ENST00000556075 1147 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.81□□□□□ -1.48
FOXA1P55317 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.81□□□□□ -1.48
FOXA1P55317 RN7SL66P-201ENST00000582099 264 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 AP001357.1-201ENST00000586304 1053 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.81□□□□□ -1.48
FOXA1P55317 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.81□□□□□ -1.48
FOXA1P55317 AC011891.2-201ENST00000604949 397 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 AC093388.1-201ENST00000609166 430 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 AC096861.1-201ENST00000616652 240 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
FOXA1P55317 AC087516.1-201ENST00000561236 2428 ntBASIC5.81□□□□□ -1.48
FOXA1P55317 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.81□□□□□ -1.48
FOXA1P55317 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.81□□□□□ -1.48
FOXA1P55317 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
FOXA1P55317 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.81□□□□□ -1.48
FOXA1P55317 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.8□□□□□ -1.48
FOXA1P55317 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
FOXA1P55317 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
FOXA1P55317 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.8□□□□□ -1.48
FOXA1P55317 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 AL133260.1-201ENST00000405720 405 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.8□□□□□ -1.48
FOXA1P55317 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.8□□□□□ -1.48
FOXA1P55317 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
FOXA1P55317 LINC00328-2P-201ENST00000436585 219 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 KRT8P51-201ENST00000438938 274 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 AC016027.4-201ENST00000450866 277 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 AC099670.1-201ENST00000455141 783 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.8□□□□□ -1.48
FOXA1P55317 RPL12P30-201ENST00000488389 499 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 ST13P12-201ENST00000508958 1094 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 AP003080.1-202ENST00000526526 915 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.8□□□□□ -1.48
FOXA1P55317 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 AL080312.2-201ENST00000613001 630 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 RFPL4AP6-201ENST00000616792 846 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 AL357562.1-201ENST00000624911 609 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 AC011933.2-201ENST00000578539 2790 ntBASIC5.8□□□□□ -1.48
FOXA1P55317 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms