Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 ENPP7P3-201ENST00000509123 241 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 MTCYBP44-201ENST00000514835 823 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AC018953.1-201ENST00000523265 730 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 AC068993.1-201ENST00000546724 589 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 MTND2P17-201ENST00000550281 688 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 AC012414.2-201ENST00000559474 187 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.33□□□□□ -1.56
HOXA1P49639 STARD6-204ENST00000584040 660 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXA1P49639 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXA1P49639 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 AC073111.2-201ENST00000605657 1075 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 OR7M1P-201ENST00000608946 533 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 HBG1-202ENST00000632727 369 ntTSL 3 BASIC5.33□□□□□ -1.56
HOXA1P49639 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 AL137058.3-201ENST00000624531 3099 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
HOXA1P49639 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
HOXA1P49639 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HOXA1P49639 BIN2P1-201ENST00000504996 1530 ntBASIC5.33□□□□□ -1.56
HOXA1P49639 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC011416.1-201ENST00000514947 1732 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HOXA1P49639 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 RNU6-1176P-201ENST00000390955 107 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AL590128.1-201ENST00000433407 286 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 AL606490.8-201ENST00000441624 319 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA1P49639 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 NDUFB4P1-201ENST00000462398 381 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 RN7SL143P-201ENST00000496780 297 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AC021146.11-201ENST00000503319 491 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC021820.1-201ENST00000525564 808 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC140063.1-201ENST00000541343 259 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 AL132640.2-202ENST00000559732 614 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 AC106785.4-201ENST00000569492 412 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC5.32□□□□□ -1.56
HOXA1P49639 AL356986.1-201ENST00000604085 341 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.32□□□□□ -1.56
HOXA1P49639 BX005040.2-201ENST00000620504 370 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AC073857.1-201ENST00000625082 1054 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 SNORA16A-202ENST00000628458 135 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AL121936.2-201ENST00000641935 662 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 PROS2P-201ENST00000474651 1951 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 LINC01616-201ENST00000561816 2280 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 AF287957.1-201ENST00000607368 1595 ntBASIC5.32□□□□□ -1.56
HOXA1P49639 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.32□□□□□ -1.56
HOXA1P49639 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.32□□□□□ -1.56
HOXA1P49639 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HOXA1P49639 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXA1P49639 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HOXA1P49639 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HOXA1P49639 RNA5SP350-201ENST00000363298 111 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 IGFL2-201ENST00000377693 607 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXA1P49639 RNU6-883P-201ENST00000384597 107 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 RNA5SP474-201ENST00000391234 90 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 AL023284.3-201ENST00000407767 334 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 MIR1231-201ENST00000408101 92 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 MTCO1P57-201ENST00000432182 261 ntBASIC5.31□□□□□ -1.56
HOXA1P49639 FTLP19-201ENST00000433300 394 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms