Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
HMGB1P09429 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
HMGB1P09429 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 CASC19-228ENST00000641414 1684 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 RNA5SP512-201ENST00000364550 120 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 RN7SKP191-201ENST00000364713 306 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AC074375.1-201ENST00000372993 192 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
HMGB1P09429 AL359694.1-201ENST00000403247 604 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 ZFAND6P1-201ENST00000434138 605 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC7.86□□□□□ -1.15
HMGB1P09429 BTBD7P2-201ENST00000441962 620 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AC023512.1-201ENST00000444513 499 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 RPL10P17-201ENST00000453852 316 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AC239804.1-201ENST00000466343 869 ntTSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 OSTC-204ENST00000512478 663 ntTSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 AP003080.1-202ENST00000526526 915 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AL162632.2-201ENST00000553933 399 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.86□□□□□ -1.15
HMGB1P09429 LINC02259-202ENST00000565543 438 ntTSL 2 BASIC7.86□□□□□ -1.15
HMGB1P09429 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC7.86□□□□□ -1.15
HMGB1P09429 AL049840.5-201ENST00000602827 552 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 CYCSP1-201ENST00000604815 315 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AC097467.4-201ENST00000605504 141 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 AL391834.1-201ENST00000609609 560 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 MIR7854-201ENST00000620068 65 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 AC127071.2-201ENST00000623293 527 ntBASIC7.86□□□□□ -1.15
HMGB1P09429 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 RACK1-235ENST00000626067 564 ntTSL 2 BASIC7.86□□□□□ -1.15
HMGB1P09429 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 MR1-209ENST00000617803 7584 ntTSL 5 BASIC7.86□□□□□ -1.15
HMGB1P09429 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
HMGB1P09429 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
HMGB1P09429 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
HMGB1P09429 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HMGB1P09429 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HMGB1P09429 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HMGB1P09429 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
HMGB1P09429 AC062029.1-202ENST00000606164 3651 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC7.85□□□□□ -1.15
HMGB1P09429 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.85□□□□□ -1.15
HMGB1P09429 API5P1-201ENST00000424316 1510 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.85□□□□□ -1.15
HMGB1P09429 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
HMGB1P09429 RNA5SP355-201ENST00000365317 135 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 MXI1-204ENST00000369612 879 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC7.85□□□□□ -1.15
HMGB1P09429 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC7.85□□□□□ -1.15
HMGB1P09429 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 AL355032.1-201ENST00000472981 438 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC108471.1-201ENST00000513977 287 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC7.85□□□□□ -1.15
HMGB1P09429 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC7.85□□□□□ -1.15
HMGB1P09429 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC7.85□□□□□ -1.15
HMGB1P09429 RPS4XP21-201ENST00000603814 750 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 AL356986.1-201ENST00000604085 341 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 AL021368.1-201ENST00000607490 540 ntBASIC7.85□□□□□ -1.15
HMGB1P09429 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC7.85□□□□□ -1.15
HMGB1P09429 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC7.85□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms