Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 BNIP3P7-201ENST00000605641 516 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AC024589.2-201ENST00000605642 1294 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 RN7SL261P-201ENST00000613441 282 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 uc_338.31-201ENST00000615595 186 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 AL122023.1-201ENST00000622847 530 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AC025262.3-201ENST00000623666 360 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
LMX1BO60663 AC087269.2-201ENST00000641764 975 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 QRSL1P1-201ENST00000400977 1540 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 ZNF658B-201ENST00000602828 3408 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.57□□□□□ -1.52
LMX1BO60663 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.56□□□□□ -1.52
LMX1BO60663 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC5.56□□□□□ -1.52
LMX1BO60663 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 YWHAZP4-201ENST00000392459 708 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 RNA5SP431-201ENST00000410312 120 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 RN7SKP240-201ENST00000410583 375 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 RN7SKP161-201ENST00000411110 305 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 RANP6-201ENST00000413691 644 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 TRGV5P-201ENST00000419915 354 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 CYP4F30P-202ENST00000420048 405 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 VN1R20P-201ENST00000425215 966 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.56□□□□□ -1.52
LMX1BO60663 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 POU5F1P5-201ENST00000445059 658 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 HMGN1P2-201ENST00000445197 310 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 UBBP5-201ENST00000446970 266 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 H3F3AP5-201ENST00000475267 429 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AP002884.1-201ENST00000479691 655 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC093664.1-201ENST00000511779 289 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 RNA5SP441-201ENST00000516809 88 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.56□□□□□ -1.52
LMX1BO60663 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.56□□□□□ -1.52
LMX1BO60663 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.56□□□□□ -1.52
LMX1BO60663 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC067805.1-201ENST00000559344 470 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AC233699.1-201ENST00000569955 1168 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 MIR4502-201ENST00000580432 81 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 RN7SL753P-201ENST00000581238 290 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC092474.3-201ENST00000603022 568 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AC007423.1-201ENST00000605009 627 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AC114477.1-201ENST00000605097 605 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AL008723.3-201ENST00000608926 449 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.56□□□□□ -1.52
LMX1BO60663 U1.41-201ENST00000617626 165 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.56□□□□□ -1.52
LMX1BO60663 CUBNP3-201ENST00000457461 1784 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
LMX1BO60663 MAPK10-287ENST00000641217 3037 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC079753.1-201ENST00000623243 3868 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
LMX1BO60663 AC005725.1-201ENST00000577346 2607 ntBASIC5.56□□□□□ -1.52
LMX1BO60663 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LMX1BO60663 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.55□□□□□ -1.52
LMX1BO60663 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
LMX1BO60663 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms