Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC113361.1-201ENST00000606683 543 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC064807.4-201ENST00000607201 407 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 MIR6883-201ENST00000614952 78 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AL158163.2-201ENST00000619110 700 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC007347.2-201ENST00000623044 180 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 MFSD8-245ENST00000641743 948 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 CR1-203ENST00000367051 7469 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 CR1-204ENST00000367052 7469 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 CR1-205ENST00000367053 7469 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SLC13A3-202ENST00000290317 3994 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NPL-212ENST00000614468 2376 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AL136298.2-201ENST00000556497 1570 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC140479.2-201ENST00000421567 3130 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC006042.3-201ENST00000454684 1469 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NPIPB5-207ENST00000451409 3660 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 ZADH2-202ENST00000537114 3205 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AL078621.1-201ENST00000272567 768 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 RNA5SP442-201ENST00000365050 107 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 SNORD116.1-201ENST00000365628 92 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 RNU6-77P-201ENST00000410554 91 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC009303.1-201ENST00000426307 352 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 MTCO1P3-201ENST00000429327 192 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 UBE2V1P1-201ENST00000430836 445 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AL365396.1-201ENST00000430854 671 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 DEFA9P-201ENST00000433042 285 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AL354983.1-201ENST00000434580 906 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AL954705.1-201ENST00000435277 559 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 RN7SL870P-201ENST00000460111 296 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AF305872.1-201ENST00000485217 471 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 RN7SL776P-201ENST00000493390 268 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 RPL7L1P7-201ENST00000509986 724 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 GCSHP1-201ENST00000512554 484 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 SEPT10P1-201ENST00000517342 1162 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC125612.1-201ENST00000547580 377 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC013457.1-201ENST00000556770 1011 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 NQO1-205ENST00000561500 891 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 MIR3912-201ENST00000577566 105 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC011193.2-201ENST00000582638 367 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC090312.2-201ENST00000582687 378 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC061975.3-201ENST00000583209 244 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC124856.1-201ENST00000600819 896 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AP000255.1-201ENST00000610276 676 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 uc_338.37-201ENST00000620113 186 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AL035661.1-201ENST00000620459 1144 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 AC022509.4-201ENST00000621404 572 ntBASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 LNX1-202ENST00000306888 3757 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 PLP1-220ENST00000612423 3132 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC8.12□□□□□ -1.11
TRAIPQ9BWF2 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC8.12□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms