Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 LINC00328-2P-201ENST00000436585 219 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC009237.1-201ENST00000442127 744 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC092967.1-201ENST00000449016 481 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SKA3Q8IX90 RN7SL714P-201ENST00000487050 298 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC116917.1-201ENST00000520558 305 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 IGHV4-55-201ENST00000520889 368 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC009120.3-201ENST00000563335 499 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC018690.1-201ENST00000608144 626 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 AL162377.2-201ENST00000624532 337 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SKA3Q8IX90 BIN2P1-201ENST00000504996 1530 ntBASIC5.56□□□□□ -1.52
SKA3Q8IX90 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SKA3Q8IX90 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SKA3Q8IX90 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SKA3Q8IX90 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SKA3Q8IX90 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 NR1H5P-201ENST00000452683 1377 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC011815.2-201ENST00000618230 2021 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 GUCY1B2-204ENST00000531898 1979 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 SNORD8-201ENST00000363915 110 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL360271.1-201ENST00000395679 510 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 RN7SKP146-201ENST00000410242 334 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC116036.1-201ENST00000412199 367 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 SMARCE1P1-201ENST00000417747 1186 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 RPL7AP51-201ENST00000422016 760 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 SETP9-201ENST00000423837 832 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 OSTCP4-201ENST00000424397 449 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 EMC3-AS1-205ENST00000438698 534 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 VPS25P1-201ENST00000455691 508 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 snoU13.29-201ENST00000459370 104 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC090602.1-201ENST00000469695 252 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 RN7SL643P-201ENST00000471845 291 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC093816.1-201ENST00000515076 913 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 CYCSP25-201ENST00000525280 316 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AP001000.1-201ENST00000526843 742 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AP005639.1-201ENST00000526939 192 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 WBP1LP12-201ENST00000604449 331 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL136097.3-201ENST00000611097 505 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 OR7E91P-202ENST00000642062 1198 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AP001157.1-201ENST00000550837 2339 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AL136984.1-201ENST00000607611 1893 ntBASIC5.55□□□□□ -1.52
SKA3Q8IX90 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
SKA3Q8IX90 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SKA3Q8IX90 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms