Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AL451063.1-201ENST00000450164 1133 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC093166.2-201ENST00000455969 1017 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC018638.3-201ENST00000461273 132 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.79□□□□□ -1.32
USP39Q53GS9 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 RPL7AP23-201ENST00000482625 776 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC026826.1-201ENST00000493002 361 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 AC093763.2-201ENST00000505334 1223 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC091874.2-201ENST00000505889 720 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 AC021106.1-201ENST00000509020 1058 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC093664.1-201ENST00000511779 289 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 RN7SKP287-201ENST00000516546 266 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 OR7E13P-201ENST00000526052 910 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.79□□□□□ -1.32
USP39Q53GS9 CSNK1A1P1-202ENST00000563423 981 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC002310.3-201ENST00000569728 723 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AC008751.2-201ENST00000597885 980 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.79□□□□□ -1.32
USP39Q53GS9 uc_338.31-201ENST00000615595 186 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.79□□□□□ -1.32
USP39Q53GS9 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AP001962.1-201ENST00000624114 559 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC004943.3-201ENST00000624116 600 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC114546.4-201ENST00000624413 369 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC6.79□□□□□ -1.32
USP39Q53GS9 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.79□□□□□ -1.32
USP39Q53GS9 AL451064.2-201ENST00000623514 1654 ntBASIC6.79□□□□□ -1.32
USP39Q53GS9 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
USP39Q53GS9 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
USP39Q53GS9 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
USP39Q53GS9 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.79□□□□□ -1.32
USP39Q53GS9 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
USP39Q53GS9 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6.78□□□□□ -1.32
USP39Q53GS9 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.78□□□□□ -1.32
USP39Q53GS9 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.78□□□□□ -1.32
USP39Q53GS9 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC6.78□□□□□ -1.32
USP39Q53GS9 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.78□□□□□ -1.32
USP39Q53GS9 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 RNA5SP431-201ENST00000410312 120 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC099782.1-201ENST00000425889 474 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 MTND5P25-201ENST00000430499 799 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.78□□□□□ -1.32
USP39Q53GS9 HMGN1P5-201ENST00000448591 263 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC135721.2-201ENST00000464237 300 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 H3F3AP5-201ENST00000475267 429 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 METTL15P1-201ENST00000481421 1045 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.78□□□□□ -1.32
USP39Q53GS9 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC6.78□□□□□ -1.32
USP39Q53GS9 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.78□□□□□ -1.32
USP39Q53GS9 AC093870.1-201ENST00000506837 213 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 HSD3BP3-201ENST00000514706 994 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC027338.1-201ENST00000514840 825 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 OR52K3P-201ENST00000531655 943 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 MRPS36P5-201ENST00000551909 298 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC084759.1-201ENST00000561168 290 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 DYNLL1P1-201ENST00000595442 269 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC093424.1-201ENST00000604999 338 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC015982.1-201ENST00000608113 465 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC074276.2-201ENST00000619891 348 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AL122023.1-201ENST00000622847 530 ntBASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms