Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CACNA1D-201ENST00000288139 9341 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 KCNK10-203ENST00000340700 7501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 MYH2-202ENST00000397183 6078 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 PRKG1-203ENST00000373980 6928 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 OR2AM1P-201ENST00000422137 422 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 AL139156.3-201ENST00000454802 394 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 AC114728.1-201ENST00000488289 483 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 RN7SKP122-201ENST00000515923 296 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC6.01□□□□□ -1.45
COL6A3P12111 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
COL6A3P12111 AC141002.1-201ENST00000607025 279 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 MIAT_exon5_1.1-201ENST00000618919 149 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 ICA1L-222ENST00000617388 8151 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
COL6A3P12111 DNAJC19P7-201ENST00000428811 344 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.01□□□□□ -1.45
COL6A3P12111 FTH1P8-201ENST00000498161 514 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.01□□□□□ -1.45
COL6A3P12111 RNA5SP143-201ENST00000516936 115 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
COL6A3P12111 AC020658.2-201ENST00000559030 4020 ntBASIC6.01□□□□□ -1.45
COL6A3P12111 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 TRPM3-213ENST00000396285 4701 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL6A3P12111 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.01□□□□□ -1.45
COL6A3P12111 AL122126.1-201ENST00000546905 1318 ntBASIC6□□□□□ -1.45
COL6A3P12111 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 FXR1-202ENST00000357559 8711 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 OR9G4-201ENST00000302957 984 ntBASIC6□□□□□ -1.45
COL6A3P12111 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6□□□□□ -1.45
COL6A3P12111 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6□□□□□ -1.45
COL6A3P12111 AC021483.2-201ENST00000567415 758 ntBASIC6□□□□□ -1.45
COL6A3P12111 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
COL6A3P12111 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 OR5M2P-202ENST00000641241 4242 ntBASIC6□□□□□ -1.45
COL6A3P12111 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 AL035555.1-201ENST00000404462 1790 ntBASIC6□□□□□ -1.45
COL6A3P12111 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6□□□□□ -1.45
COL6A3P12111 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 AC018809.2-201ENST00000602436 3823 ntBASIC6□□□□□ -1.45
COL6A3P12111 ATP8A2-204ENST00000381655 9575 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC6□□□□□ -1.45
COL6A3P12111 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 CREB1-201ENST00000353267 7588 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 ENPEP-201ENST00000265162 6943 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 RN7SKP263-201ENST00000411194 309 ntBASIC6□□□□□ -1.45
COL6A3P12111 AL353748.1-201ENST00000440753 474 ntBASIC6□□□□□ -1.45
COL6A3P12111 AL513533.1-201ENST00000453728 415 ntBASIC6□□□□□ -1.45
COL6A3P12111 AC073610.1-201ENST00000489971 396 ntBASIC6□□□□□ -1.45
COL6A3P12111 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6□□□□□ -1.45
COL6A3P12111 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6□□□□□ -1.45
COL6A3P12111 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6□□□□□ -1.45
COL6A3P12111 AC135068.12-201ENST00000637370 931 ntBASIC6□□□□□ -1.45
COL6A3P12111 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
COL6A3P12111 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6□□□□□ -1.45
COL6A3P12111 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 IMMTP1-201ENST00000435590 2219 ntBASIC6□□□□□ -1.45
COL6A3P12111 AC027279.1-201ENST00000568885 4284 ntBASIC6□□□□□ -1.45
COL6A3P12111 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL6A3P12111 RNU1-46P-201ENST00000384425 164 ntBASIC6□□□□□ -1.45
COL6A3P12111 AL158073.1-201ENST00000426848 1104 ntBASIC6□□□□□ -1.45
COL6A3P12111 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6□□□□□ -1.45
COL6A3P12111 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC6□□□□□ -1.45
COL6A3P12111 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6□□□□□ -1.45
COL6A3P12111 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 PDCD6IPP1-202ENST00000622242 1064 ntBASIC6□□□□□ -1.45
COL6A3P12111 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 MIPEPP2-201ENST00000422560 1819 ntBASIC6□□□□□ -1.45
COL6A3P12111 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms