Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC093635.1-201ENST00000609028 555 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LMX1BO60663 AP002833.3-201ENST00000625075 2265 ntBASIC5.59□□□□□ -1.51
LMX1BO60663 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC5.59□□□□□ -1.51
LMX1BO60663 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.52
LMX1BO60663 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
LMX1BO60663 IFIT1P1-201ENST00000400497 1449 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.58□□□□□ -1.52
LMX1BO60663 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
LMX1BO60663 SNORD8-201ENST00000363915 110 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 RNA5SP435-201ENST00000364044 108 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 RNA5SP433-201ENST00000364491 114 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 SNORA70H-201ENST00000383910 135 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 SNORA70J-201ENST00000384182 135 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
LMX1BO60663 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC5.58□□□□□ -1.52
LMX1BO60663 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 AC242426.1-201ENST00000435270 960 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC092106.2-201ENST00000436597 487 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 COL11A2P1-205ENST00000441798 676 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 VN1R38P-201ENST00000450265 887 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 RPL12P24-201ENST00000474907 486 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.58□□□□□ -1.52
LMX1BO60663 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 IGHV1-14-201ENST00000523391 241 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC006512.2-201ENST00000543250 486 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 AC026956.1-201ENST00000558741 396 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 OR1E3-201ENST00000575608 948 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC010615.3-201ENST00000597319 394 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 BX323046.1-201ENST00000610145 535 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AL589743.6-201ENST00000611025 117 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC022400.9-201ENST00000623633 273 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 AC080188.3-201ENST00000624842 748 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.58□□□□□ -1.52
LMX1BO60663 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 TMCC1P1-201ENST00000518897 1980 ntBASIC5.58□□□□□ -1.52
LMX1BO60663 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.58□□□□□ -1.52
LMX1BO60663 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
LMX1BO60663 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LMX1BO60663 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
LMX1BO60663 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 AC011455.2-201ENST00000599320 3336 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
LMX1BO60663 AL353763.1-201ENST00000624467 1628 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.57□□□□□ -1.52
LMX1BO60663 ZNF92P1Y-201ENST00000415010 1191 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
LMX1BO60663 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.57□□□□□ -1.52
LMX1BO60663 AC003989.1-201ENST00000434569 565 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AP000949.1-201ENST00000438328 629 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AL513343.1-201ENST00000451818 792 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 MTND3P4-201ENST00000453537 303 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 SNX18P26-201ENST00000458433 740 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.57□□□□□ -1.52
LMX1BO60663 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.57□□□□□ -1.52
LMX1BO60663 HMGN1P16-201ENST00000508308 283 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC5.57□□□□□ -1.52
LMX1BO60663 SNORA74.1-201ENST00000516320 180 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 MTND1P36-201ENST00000522384 936 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.57□□□□□ -1.52
LMX1BO60663 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC5.57□□□□□ -1.52
LMX1BO60663 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.57□□□□□ -1.52
LMX1BO60663 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LMX1BO60663 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.57□□□□□ -1.52
LMX1BO60663 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.57□□□□□ -1.52
LMX1BO60663 AC002310.3-201ENST00000569728 723 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AC005726.4-201ENST00000582858 458 ntBASIC5.57□□□□□ -1.52
LMX1BO60663 AC245128.3-201ENST00000594721 748 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms