Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 FO393409.1-201ENST00000399325 1372 ntBASIC10.45□□□□□ -0.74
CUX2O14529 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX2O14529 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX2O14529 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX2O14529 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 RNU1-106P-201ENST00000384382 164 ntBASIC10.45□□□□□ -0.74
CUX2O14529 AL023284.3-201ENST00000407767 334 ntBASIC10.45□□□□□ -0.74
CUX2O14529 AC245047.2-201ENST00000441060 530 ntBASIC10.45□□□□□ -0.74
CUX2O14529 IGKV1OR10-1-201ENST00000442306 329 ntBASIC10.45□□□□□ -0.74
CUX2O14529 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX2O14529 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC10.45□□□□□ -0.74
CUX2O14529 RPS21P4-201ENST00000487122 248 ntBASIC10.45□□□□□ -0.74
CUX2O14529 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC10.45□□□□□ -0.74
CUX2O14529 AC011840.5-201ENST00000582125 771 ntBASIC10.45□□□□□ -0.74
CUX2O14529 HCG18-243ENST00000602498 327 ntTSL 3 BASIC10.45□□□□□ -0.74
CUX2O14529 SUGT1P3-202ENST00000604259 383 ntBASIC10.45□□□□□ -0.74
CUX2O14529 AC136428.4-201ENST00000634254 1155 ntBASIC10.45□□□□□ -0.74
CUX2O14529 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC10.45□□□□□ -0.74
CUX2O14529 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 CACNA1D-201ENST00000288139 9341 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC10.45□□□□□ -0.74
CUX2O14529 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
CUX2O14529 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 RNVU1-6-201ENST00000364688 164 ntBASIC10.44□□□□□ -0.74
CUX2O14529 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 ZNF619P1-201ENST00000446539 752 ntBASIC10.44□□□□□ -0.74
CUX2O14529 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX2O14529 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 RPL7P39-201ENST00000481157 744 ntBASIC10.44□□□□□ -0.74
CUX2O14529 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC10.44□□□□□ -0.74
CUX2O14529 RNU6-615P-201ENST00000516065 106 ntBASIC10.44□□□□□ -0.74
CUX2O14529 FAM27E4-201ENST00000605259 342 ntBASIC10.44□□□□□ -0.74
CUX2O14529 AL008723.3-201ENST00000608926 449 ntBASIC10.44□□□□□ -0.74
CUX2O14529 AL357562.1-201ENST00000624911 609 ntBASIC10.44□□□□□ -0.74
CUX2O14529 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX2O14529 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX2O14529 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC10.44□□□□□ -0.74
CUX2O14529 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX2O14529 AP002364.1-201ENST00000623330 3386 ntBASIC10.44□□□□□ -0.74
CUX2O14529 RMST-210ENST00000640149 2844 ntTSL 5 BASIC10.44□□□□□ -0.74
CUX2O14529 COG2-209ENST00000534989 2963 ntTSL 2 BASIC10.44□□□□□ -0.74
CUX2O14529 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
CUX2O14529 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
CUX2O14529 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC10.44□□□□□ -0.74
CUX2O14529 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC10.44□□□□□ -0.74
CUX2O14529 MAPK10-323ENST00000641493 3207 ntBASIC10.44□□□□□ -0.74
CUX2O14529 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC10.44□□□□□ -0.74
CUX2O14529 CNPY1-201ENST00000321736 2378 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
CUX2O14529 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 AC016739.1-201ENST00000405359 345 ntBASIC10.43□□□□□ -0.74
CUX2O14529 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX2O14529 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
CUX2O14529 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX2O14529 AC012519.1-201ENST00000424588 610 ntBASIC10.43□□□□□ -0.74
CUX2O14529 C4BPAP2-201ENST00000428434 478 ntBASIC10.43□□□□□ -0.74
CUX2O14529 AC092647.3-201ENST00000443044 633 ntBASIC10.43□□□□□ -0.74
CUX2O14529 AC083982.1-201ENST00000485679 344 ntBASIC10.43□□□□□ -0.74
CUX2O14529 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX2O14529 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC10.43□□□□□ -0.74
CUX2O14529 Y_RNA.710-201ENST00000516975 110 ntBASIC10.43□□□□□ -0.74
CUX2O14529 NRBF2P4-201ENST00000520874 850 ntBASIC10.43□□□□□ -0.74
CUX2O14529 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX2O14529 AC008115.3-201ENST00000614874 549 ntBASIC10.43□□□□□ -0.74
CUX2O14529 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC10.43□□□□□ -0.74
CUX2O14529 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
CUX2O14529 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
CUX2O14529 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
CUX2O14529 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 AP004289.1-201ENST00000436307 2205 ntBASIC10.43□□□□□ -0.74
CUX2O14529 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
CUX2O14529 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
CUX2O14529 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
CUX2O14529 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
CUX2O14529 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms