Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 ATP6V1G1P4-201ENST00000438388 335 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AL645638.1-201ENST00000440519 361 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 GAPDHP37-201ENST00000442317 968 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC234771.2-201ENST00000445718 597 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 TVP23BP2-201ENST00000455082 615 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 NMNAT1P3-201ENST00000457517 888 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC008410.1-201ENST00000483777 339 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 RN7SL205P-201ENST00000490174 284 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC093801.2-201ENST00000503966 1050 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC021146.7-201ENST00000509604 775 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AP000662.1-201ENST00000530952 487 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AL445383.1-201ENST00000554689 874 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC023827.2-201ENST00000566880 1061 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 MT1CP-201ENST00000567054 174 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 SNORA70D-201ENST00000578836 135 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 MTCO2P22-201ENST00000603246 681 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AL158050.2-201ENST00000605336 568 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC008759.3-201ENST00000613300 508 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 uc_338.29-201ENST00000615099 168 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC131009.3-201ENST00000621809 287 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 5S_rRNA.29-201ENST00000641250 107 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC129502.1-201ENST00000623261 1654 ntBASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC144BQ3MJ40 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 LRRC37A16P-202ENST00000586022 3725 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AL591848.4-201ENST00000567832 3472 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 RNU6-1257P-201ENST00000384625 110 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 RNU6-1000P-201ENST00000391066 106 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AL590635.1-201ENST00000406314 586 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 LSM5-206ENST00000409987 504 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 RN7SKP271-201ENST00000410528 320 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 MTND4P11-201ENST00000417020 1058 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 BX119321.1-201ENST00000428912 797 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 RPSAP32-201ENST00000432681 526 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 RPL6P30-201ENST00000443382 862 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC112518.2-201ENST00000508565 425 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC034244.2-201ENST00000514668 858 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC093816.1-201ENST00000515076 913 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 IGHVII-60-1-201ENST00000519079 256 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 DHFRP1-201ENST00000579682 559 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 RPAP2P1-201ENST00000603626 1168 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC012368.3-201ENST00000604190 219 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC034229.4-201ENST00000607861 441 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AC093635.1-201ENST00000609028 555 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 AP000864.1-201ENST00000609424 650 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 MIR6806-201ENST00000622141 64 ntBASIC7.78□□□□□ -1.16
CCDC144BQ3MJ40 FRG1DP-201ENST00000635586 771 ntBASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms