Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC8.08□□□□□ -1.12
HOXC9P31274 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
HOXC9P31274 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
HOXC9P31274 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC8.07□□□□□ -1.12
HOXC9P31274 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
HOXC9P31274 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC8.07□□□□□ -1.12
HOXC9P31274 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
HOXC9P31274 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC8.07□□□□□ -1.12
HOXC9P31274 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
HOXC9P31274 SPATA31C1-201ENST00000420021 3895 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 MIR375-201ENST00000362103 64 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 SDHDP6-201ENST00000414693 480 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 BMS1P13-201ENST00000417301 885 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 AL513325.1-201ENST00000417716 1034 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 AL121776.1-201ENST00000429337 372 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC8.07□□□□□ -1.12
HOXC9P31274 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC8.07□□□□□ -1.12
HOXC9P31274 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC8.07□□□□□ -1.12
HOXC9P31274 RPS4XP14-201ENST00000493072 781 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 RNA5SP362-201ENST00000516048 118 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC8.07□□□□□ -1.12
HOXC9P31274 IGHV1-14-201ENST00000523391 241 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 AC010547.6-201ENST00000571789 193 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC8.07□□□□□ -1.12
HOXC9P31274 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
HOXC9P31274 SHQ1P1-201ENST00000437111 1544 ntBASIC8.07□□□□□ -1.12
HOXC9P31274 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC8.07□□□□□ -1.12
HOXC9P31274 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC8.07□□□□□ -1.12
HOXC9P31274 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
HOXC9P31274 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC8.07□□□□□ -1.12
HOXC9P31274 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC8.07□□□□□ -1.12
HOXC9P31274 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 AL359091.1-201ENST00000449048 1734 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 RN7SKP128-201ENST00000364270 303 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
HOXC9P31274 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 SNRPEP6-201ENST00000407465 277 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 LSM5-203ENST00000409782 649 ntTSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
HOXC9P31274 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC8.06□□□□□ -1.12
HOXC9P31274 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC8.06□□□□□ -1.12
HOXC9P31274 SSX6-203ENST00000509958 336 ntTSL 3 BASIC8.06□□□□□ -1.12
HOXC9P31274 SNORA70.20-201ENST00000516848 126 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC8.06□□□□□ -1.12
HOXC9P31274 OR56A7P-201ENST00000524865 941 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC8.06□□□□□ -1.12
HOXC9P31274 MIR193BHG-214ENST00000641765 509 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 AC092821.3-202ENST00000641304 2767 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 AC092111.1-201ENST00000618256 3358 ntBASIC8.06□□□□□ -1.12
HOXC9P31274 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
HOXC9P31274 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC8.06□□□□□ -1.12
HOXC9P31274 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
HOXC9P31274 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC8.05□□□□□ -1.12
HOXC9P31274 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
HOXC9P31274 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
HOXC9P31274 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
HOXC9P31274 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC8.05□□□□□ -1.12
HOXC9P31274 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
HOXC9P31274 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
HOXC9P31274 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
HOXC9P31274 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC8.05□□□□□ -1.12
HOXC9P31274 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
HOXC9P31274 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC8.05□□□□□ -1.12
HOXC9P31274 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
HOXC9P31274 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC8.05□□□□□ -1.12
HOXC9P31274 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC8.05□□□□□ -1.12
HOXC9P31274 YWHAEP1-201ENST00000453697 763 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 AL136038.1-201ENST00000497246 351 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC8.05□□□□□ -1.12
HOXC9P31274 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC8.05□□□□□ -1.12
HOXC9P31274 MIR4489-201ENST00000578869 62 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 AC020916.2-201ENST00000591242 360 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 AC020765.1-201ENST00000604296 328 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 AC130448.2-201ENST00000624082 374 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 CGA-206ENST00000630630 832 ntTSL 2 BASIC8.05□□□□□ -1.12
HOXC9P31274 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC8.05□□□□□ -1.12
HOXC9P31274 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
HOXC9P31274 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC8.05□□□□□ -1.12
HOXC9P31274 AL161901.1-201ENST00000624954 3425 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC8.05□□□□□ -1.12
HOXC9P31274 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC8.05□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms