Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC061975.7-201ENST00000592016 2692 ntBASIC5.89□□□□□ -1.47
COL5A1P20908 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.89□□□□□ -1.47
COL5A1P20908 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
COL5A1P20908 CAST-202ENST00000325674 3356 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL5A1P20908 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC5.89□□□□□ -1.47
COL5A1P20908 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL5A1P20908 RN7SKP115-201ENST00000363177 317 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A1P20908 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A1P20908 AC097721.1-201ENST00000427150 1253 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A1P20908 RNA5SP34-201ENST00000516887 130 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 CYCSP22-201ENST00000517555 339 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A1P20908 AC110056.1-201ENST00000525759 911 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.88□□□□□ -1.47
COL5A1P20908 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A1P20908 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A1P20908 AC006924.1-201ENST00000610750 559 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 RN7SL544P-201ENST00000617232 284 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 RN7SL763P-201ENST00000620922 284 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AL450226.2-201ENST00000622913 439 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
COL5A1P20908 Z93929.1-201ENST00000418200 1475 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
COL5A1P20908 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A1P20908 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL5A1P20908 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 Z83820.1-201ENST00000456978 1499 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AL391261.1-201ENST00000555712 1479 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A1P20908 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
COL5A1P20908 U3.7-201ENST00000363668 216 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A1P20908 FABP12P1-201ENST00000401911 322 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.88□□□□□ -1.47
COL5A1P20908 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A1P20908 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 NMD3P2-201ENST00000421815 761 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AC127526.2-201ENST00000426436 775 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A1P20908 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A1P20908 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.88□□□□□ -1.47
COL5A1P20908 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A1P20908 RN7SL610P-201ENST00000463845 291 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 AC006499.3-201ENST00000506077 748 ntBASIC5.88□□□□□ -1.47
COL5A1P20908 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.88□□□□□ -1.47
COL5A1P20908 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.88□□□□□ -1.47
COL5A1P20908 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL5A1P20908 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 CCDC162P-202ENST00000368966 6751 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A1P20908 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL5A1P20908 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 AC005034.3-201ENST00000604845 1747 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.87□□□□□ -1.47
COL5A1P20908 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.87□□□□□ -1.47
COL5A1P20908 PDZK1P1-202ENST00000425209 1350 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC5.87□□□□□ -1.47
COL5A1P20908 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A1P20908 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL5A1P20908 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 AC016739.1-201ENST00000405359 345 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 FABP5P2-201ENST00000439042 408 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.87□□□□□ -1.47
COL5A1P20908 RPL23AP60-201ENST00000450011 454 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 RPS23P6-201ENST00000466136 431 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.87□□□□□ -1.47
COL5A1P20908 AC096754.1-201ENST00000508904 818 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 GAPDHP71-201ENST00000511530 1003 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.87□□□□□ -1.47
COL5A1P20908 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.87□□□□□ -1.47
COL5A1P20908 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.87□□□□□ -1.47
COL5A1P20908 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.87□□□□□ -1.47
COL5A1P20908 AL589674.2-201ENST00000604304 337 ntBASIC5.87□□□□□ -1.47
COL5A1P20908 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.87□□□□□ -1.47
COL5A1P20908 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.87□□□□□ -1.47
COL5A1P20908 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL5A1P20908 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL5A1P20908 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL5A1P20908 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms