Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RN7SKP144-201ENST00000411108 279 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 GAPDHP75-201ENST00000433910 943 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 TVP23CP1-201ENST00000450317 639 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC7.37□□□□□ -1.23
COL6A1P12109 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC7.37□□□□□ -1.23
COL6A1P12109 MTND2P30-201ENST00000456663 382 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 SULT1D1P-201ENST00000458020 882 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC7.37□□□□□ -1.23
COL6A1P12109 AP002453.1-201ENST00000492327 668 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 OR7E99P-201ENST00000505750 922 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 OR7E13P-201ENST00000526052 910 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.37□□□□□ -1.23
COL6A1P12109 AC051619.2-201ENST00000559063 397 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC7.37□□□□□ -1.23
COL6A1P12109 AC025165.5-201ENST00000602802 578 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 AL080312.2-201ENST00000613001 630 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 DRG1-207ENST00000629688 309 ntTSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 AC073488.9-201ENST00000631601 754 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 MTND2P41-201ENST00000637599 773 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.37□□□□□ -1.23
COL6A1P12109 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
COL6A1P12109 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
COL6A1P12109 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
COL6A1P12109 LPAL2-203ENST00000454031 2498 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
COL6A1P12109 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC7.36□□□□□ -1.23
COL6A1P12109 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC7.36□□□□□ -1.23
COL6A1P12109 AC093225.1-201ENST00000506867 1408 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC7.36□□□□□ -1.23
COL6A1P12109 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC7.36□□□□□ -1.23
COL6A1P12109 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 AC087752.1-201ENST00000391360 558 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 AC007068.1-201ENST00000396690 844 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 PCNPP4-201ENST00000414817 517 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC7.36□□□□□ -1.23
COL6A1P12109 AC023141.6-201ENST00000429418 337 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC7.36□□□□□ -1.23
COL6A1P12109 RBMY3AP-201ENST00000449381 1145 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 PPIAP27-201ENST00000453800 265 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC7.36□□□□□ -1.23
COL6A1P12109 AC112225.1-201ENST00000508230 297 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC7.36□□□□□ -1.23
COL6A1P12109 AC005351.1-201ENST00000511152 786 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 RNA5SP418-201ENST00000515951 117 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 SCARNA5-201ENST00000516201 276 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 AC060775.1-201ENST00000518241 520 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC7.36□□□□□ -1.23
COL6A1P12109 HNRNPRP2-201ENST00000528421 743 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 OR4A21P-201ENST00000532759 944 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC7.36□□□□□ -1.23
COL6A1P12109 AC079905.1-201ENST00000549280 475 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 AL512428.1-201ENST00000562221 654 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 AC093510.2-201ENST00000562820 896 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 TEX41-218ENST00000596540 882 ntTSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC7.36□□□□□ -1.23
COL6A1P12109 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 SNORD91A-202ENST00000609620 191 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 AC087683.2-201ENST00000611384 326 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 AP000943.4-201ENST00000622912 357 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 AC013437.2-201ENST00000639587 677 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.23
COL6A1P12109 RPL31P11-201ENST00000426558 1558 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 FLJ42393-201ENST00000623801 2270 ntBASIC7.36□□□□□ -1.23
COL6A1P12109 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
COL6A1P12109 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL6A1P12109 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC7.36□□□□□ -1.23
COL6A1P12109 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC7.35□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms