Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNA5SP188-201ENST00000362916 129 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 RNA5SP350-201ENST00000363298 111 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXD4P09016 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 HMGB1P7-201ENST00000450921 612 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.82□□□□□ -1.48
HOXD4P09016 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXD4P09016 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
HOXD4P09016 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 KHDC1P1-201ENST00000511053 508 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXD4P09016 KCTD9P4-201ENST00000526766 1166 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXD4P09016 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXD4P09016 AC093524.1-201ENST00000564266 1094 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 AL356986.1-201ENST00000604085 341 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.82□□□□□ -1.48
HOXD4P09016 AL365181.4-201ENST00000609800 547 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 MIR6862-1-201ENST00000613016 70 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 MIR6862-2-201ENST00000614755 70 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 OR1N1-202ENST00000619659 939 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 AC073488.9-201ENST00000631601 754 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 LINC02495-203ENST00000636704 242 ntBASIC5.82□□□□□ -1.48
HOXD4P09016 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
HOXD4P09016 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
HOXD4P09016 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
HOXD4P09016 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HOXD4P09016 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 PARP4P1-201ENST00000435945 2337 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
HOXD4P09016 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC5.81□□□□□ -1.48
HOXD4P09016 EEF1A1P12-201ENST00000443590 1346 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXD4P09016 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXD4P09016 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXD4P09016 USP9YP3-201ENST00000434481 1766 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXD4P09016 RPL5P20-201ENST00000403848 896 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 RPL23AP85-201ENST00000421838 433 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXD4P09016 MRPS21P2-201ENST00000424704 264 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC110602.1-201ENST00000437414 318 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 RPSAP41-201ENST00000439695 860 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 GTF2IP14-201ENST00000441415 586 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 RPL5P7-201ENST00000444235 813 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 CREM-242ENST00000490511 469 ntTSL 2 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.81□□□□□ -1.48
HOXD4P09016 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 AC009879.1-201ENST00000520029 839 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXD4P09016 NPIPB14P-203ENST00000532298 987 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.81□□□□□ -1.48
HOXD4P09016 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXD4P09016 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXD4P09016 AC008691.1-209ENST00000642094 814 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
HOXD4P09016 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.81□□□□□ -1.48
HOXD4P09016 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXD4P09016 AL022323.4-201ENST00000623980 13120 ntBASIC5.81□□□□□ -1.48
HOXD4P09016 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 NR1H5P-201ENST00000452683 1377 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
HOXD4P09016 AL049634.1-201ENST00000453770 1720 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms