Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
CUX2O14529 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CUX2O14529 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC10.49□□□□□ -0.73
CUX2O14529 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
CUX2O14529 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
CUX2O14529 AC025809.2-201ENST00000625085 1802 ntBASIC10.49□□□□□ -0.73
CUX2O14529 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
CUX2O14529 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
CUX2O14529 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC10.49□□□□□ -0.73
CUX2O14529 AL354868.1-201ENST00000417077 482 ntBASIC10.49□□□□□ -0.73
CUX2O14529 SLC35E1P1-201ENST00000419313 864 ntBASIC10.49□□□□□ -0.73
CUX2O14529 KIF4CP-201ENST00000422742 1279 ntBASIC10.49□□□□□ -0.73
CUX2O14529 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC10.49□□□□□ -0.73
CUX2O14529 AC022832.1-201ENST00000530718 645 ntBASIC10.49□□□□□ -0.73
CUX2O14529 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC10.49□□□□□ -0.73
CUX2O14529 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC10.49□□□□□ -0.73
CUX2O14529 AC009704.2-201ENST00000618739 483 ntBASIC10.49□□□□□ -0.73
CUX2O14529 MIR7159-201ENST00000620587 66 ntBASIC10.49□□□□□ -0.73
CUX2O14529 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC10.49□□□□□ -0.73
CUX2O14529 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
CUX2O14529 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC10.48□□□□□ -0.73
CUX2O14529 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
CUX2O14529 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
CUX2O14529 RNU4ATAC2P-201ENST00000408674 126 ntBASIC10.48□□□□□ -0.73
CUX2O14529 AL161722.1-201ENST00000446972 1032 ntBASIC10.48□□□□□ -0.73
CUX2O14529 RPS29P33-201ENST00000456717 146 ntBASIC10.48□□□□□ -0.73
CUX2O14529 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC10.48□□□□□ -0.73
CUX2O14529 SNORA43.3-201ENST00000517240 103 ntBASIC10.48□□□□□ -0.73
CUX2O14529 AC006530.1-201ENST00000555980 571 ntBASIC10.48□□□□□ -0.73
CUX2O14529 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC10.48□□□□□ -0.73
CUX2O14529 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC10.48□□□□□ -0.73
CUX2O14529 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC10.48□□□□□ -0.73
CUX2O14529 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC10.48□□□□□ -0.73
CUX2O14529 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 PDZK1P1-202ENST00000425209 1350 ntBASIC10.48□□□□□ -0.73
CUX2O14529 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
CUX2O14529 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC10.47□□□□□ -0.73
CUX2O14529 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC10.47□□□□□ -0.73
CUX2O14529 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CUX2O14529 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
CUX2O14529 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC10.47□□□□□ -0.73
CUX2O14529 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
CUX2O14529 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
CUX2O14529 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC10.47□□□□□ -0.73
CUX2O14529 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC10.47□□□□□ -0.73
CUX2O14529 DUTP4-201ENST00000424782 475 ntBASIC10.47□□□□□ -0.73
CUX2O14529 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC10.47□□□□□ -0.73
CUX2O14529 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC10.47□□□□□ -0.73
CUX2O14529 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC10.47□□□□□ -0.73
CUX2O14529 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC10.47□□□□□ -0.73
CUX2O14529 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
CUX2O14529 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC10.47□□□□□ -0.73
CUX2O14529 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
CUX2O14529 AL049634.1-201ENST00000453770 1720 ntBASIC10.47□□□□□ -0.73
CUX2O14529 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC10.46□□□□□ -0.73
CUX2O14529 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
CUX2O14529 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
CUX2O14529 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
CUX2O14529 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
CUX2O14529 AC009804.1-201ENST00000400949 179 ntBASIC10.46□□□□□ -0.74
CUX2O14529 TPT1P12-201ENST00000448968 492 ntBASIC10.46□□□□□ -0.74
CUX2O14529 EIF4EBP2P1-201ENST00000450009 343 ntBASIC10.46□□□□□ -0.74
CUX2O14529 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC10.46□□□□□ -0.74
CUX2O14529 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.74
CUX2O14529 RN7SL738P-201ENST00000470264 297 ntBASIC10.46□□□□□ -0.74
CUX2O14529 AC072052.1-201ENST00000496556 306 ntBASIC10.46□□□□□ -0.74
CUX2O14529 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC10.46□□□□□ -0.74
CUX2O14529 IGHVIII-47-1-201ENST00000518187 331 ntBASIC10.46□□□□□ -0.74
CUX2O14529 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC10.46□□□□□ -0.74
CUX2O14529 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC10.46□□□□□ -0.74
CUX2O14529 AL049872.1-201ENST00000556323 322 ntBASIC10.46□□□□□ -0.74
CUX2O14529 DPPA2P4-201ENST00000563717 878 ntBASIC10.46□□□□□ -0.74
CUX2O14529 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC10.46□□□□□ -0.74
CUX2O14529 MIR4480-201ENST00000582492 71 ntBASIC10.46□□□□□ -0.74
CUX2O14529 AL953862.2-201ENST00000603089 820 ntBASIC10.46□□□□□ -0.74
CUX2O14529 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
CUX2O14529 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
CUX2O14529 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
CUX2O14529 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
CUX2O14529 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.74
CUX2O14529 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
CUX2O14529 ATM-215ENST00000530958 5718 ntTSL 2 BASIC10.45□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms