Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
LIG3P49916 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC7.54□□□□□ -1.2
LIG3P49916 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
LIG3P49916 ZNF849P-201ENST00000594711 1566 ntBASIC7.54□□□□□ -1.2
LIG3P49916 AL139384.2-201ENST00000613809 3590 ntBASIC7.54□□□□□ -1.2
LIG3P49916 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC7.54□□□□□ -1.2
LIG3P49916 AC092451.3-201ENST00000625067 1343 ntBASIC7.53□□□□□ -1.2
LIG3P49916 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 AP000547.3-204ENST00000588548 2523 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 RNU4-51P-201ENST00000364206 140 ntBASIC7.53□□□□□ -1.2
LIG3P49916 RNU4-24P-201ENST00000364565 139 ntBASIC7.53□□□□□ -1.2
LIG3P49916 RNU1-122P-201ENST00000365538 156 ntBASIC7.53□□□□□ -1.2
LIG3P49916 NXT2-204ENST00000372107 937 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 RNU5A-2P-201ENST00000384337 116 ntBASIC7.53□□□□□ -1.2
LIG3P49916 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC7.53□□□□□ -1.2
LIG3P49916 RN7SKP236-201ENST00000410635 284 ntBASIC7.53□□□□□ -1.2
LIG3P49916 RAP1BP1-201ENST00000412709 553 ntBASIC7.53□□□□□ -1.2
LIG3P49916 USP9YP26-201ENST00000421008 661 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC7.53□□□□□ -1.2
LIG3P49916 SNRK-AS1-201ENST00000422681 750 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 SNRPEP5-201ENST00000425442 278 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC7.53□□□□□ -1.2
LIG3P49916 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
LIG3P49916 CR391992.1-201ENST00000438601 394 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC074286.1-202ENST00000441205 567 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 RNF148-202ENST00000447240 839 ntTSL 2 BASIC7.53□□□□□ -1.2
LIG3P49916 MRPL35P2-201ENST00000448009 511 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC104978.1-201ENST00000449387 391 ntBASIC7.53□□□□□ -1.2
LIG3P49916 MRPL35P4-201ENST00000453682 566 ntBASIC7.53□□□□□ -1.2
LIG3P49916 MTCO3P16-201ENST00000454456 754 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 MTND4LP3-201ENST00000468320 276 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC005550.2-201ENST00000476382 318 ntBASIC7.53□□□□□ -1.2
LIG3P49916 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC7.53□□□□□ -1.2
LIG3P49916 AC074087.1-201ENST00000512059 724 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 OR5AM1P-201ENST00000532136 1032 ntBASIC7.53□□□□□ -1.2
LIG3P49916 CRADD-210ENST00000552033 622 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 AL049869.4-201ENST00000555669 178 ntBASIC7.53□□□□□ -1.2
LIG3P49916 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC7.53□□□□□ -1.2
LIG3P49916 AC023813.2-201ENST00000564321 469 ntBASIC7.53□□□□□ -1.2
LIG3P49916 LINC01572-204ENST00000570035 831 ntTSL 3 BASIC7.53□□□□□ -1.2
LIG3P49916 AL354943.1-201ENST00000572103 781 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 AC108451.2-201ENST00000603875 538 ntBASIC7.53□□□□□ -1.2
LIG3P49916 SUMO2P14-201ENST00000604488 293 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC005377.1-201ENST00000605126 456 ntBASIC7.53□□□□□ -1.2
LIG3P49916 U47924.1-201ENST00000606539 434 ntBASIC7.53□□□□□ -1.2
LIG3P49916 RN7SL680P-201ENST00000620379 299 ntBASIC7.53□□□□□ -1.2
LIG3P49916 ZNF710-AS1-202ENST00000620791 2133 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC241377.2-202ENST00000636462 997 ntBASIC7.53□□□□□ -1.2
LIG3P49916 AC007671.2-201ENST00000637344 619 ntBASIC7.53□□□□□ -1.2
LIG3P49916 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 HSPD1P7-201ENST00000447985 1686 ntBASIC7.53□□□□□ -1.2
LIG3P49916 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 AL353795.1-201ENST00000439134 1775 ntBASIC7.53□□□□□ -1.2
LIG3P49916 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
LIG3P49916 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
LIG3P49916 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.53□□□□□ -1.2
LIG3P49916 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC7.52□□□□□ -1.2
LIG3P49916 AL391380.1-201ENST00000439300 1432 ntBASIC7.52□□□□□ -1.2
LIG3P49916 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.52□□□□□ -1.2
LIG3P49916 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC7.52□□□□□ -1.2
LIG3P49916 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.52□□□□□ -1.2
LIG3P49916 ELL2P3-201ENST00000457883 1602 ntBASIC7.52□□□□□ -1.2
LIG3P49916 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 AP000766.1-201ENST00000561746 4140 ntBASIC7.52□□□□□ -1.21
LIG3P49916 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC7.52□□□□□ -1.21
LIG3P49916 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
LIG3P49916 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
LIG3P49916 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC7.52□□□□□ -1.21
LIG3P49916 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.21
LIG3P49916 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 OR51M1-201ENST00000328611 1058 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
LIG3P49916 MIR498-201ENST00000385134 124 ntBASIC7.52□□□□□ -1.21
LIG3P49916 GRXCR1-201ENST00000399770 991 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
LIG3P49916 LYPLA1P3-201ENST00000402650 695 ntBASIC7.52□□□□□ -1.21
LIG3P49916 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms