Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC5.89□□□□□ -1.47
SOX3P41225 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.89□□□□□ -1.47
SOX3P41225 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 AC107958.1-201ENST00000556576 290 ntBASIC5.89□□□□□ -1.47
SOX3P41225 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC5.89□□□□□ -1.47
SOX3P41225 AC090616.1-201ENST00000583895 447 ntBASIC5.89□□□□□ -1.47
SOX3P41225 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.89□□□□□ -1.47
SOX3P41225 AL135999.3-201ENST00000610501 812 ntBASIC5.89□□□□□ -1.47
SOX3P41225 MIR7109-201ENST00000613748 65 ntBASIC5.89□□□□□ -1.47
SOX3P41225 AL132640.3-201ENST00000630473 177 ntBASIC5.89□□□□□ -1.47
SOX3P41225 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SOX3P41225 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX3P41225 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 AC005725.1-201ENST00000577346 2607 ntBASIC5.89□□□□□ -1.47
SOX3P41225 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
SOX3P41225 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SOX3P41225 AC018765.1-201ENST00000623357 3446 ntBASIC5.89□□□□□ -1.47
SOX3P41225 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX3P41225 AL353763.1-201ENST00000624467 1628 ntBASIC5.88□□□□□ -1.47
SOX3P41225 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
SOX3P41225 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.88□□□□□ -1.47
SOX3P41225 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 AC092646.2-201ENST00000431242 2095 ntBASIC5.88□□□□□ -1.47
SOX3P41225 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SOX3P41225 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.88□□□□□ -1.47
SOX3P41225 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 RNU1-65P-201ENST00000363919 148 ntBASIC5.88□□□□□ -1.47
SOX3P41225 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 YWHAZP6-201ENST00000399764 738 ntBASIC5.88□□□□□ -1.47
SOX3P41225 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 OR52E7P-201ENST00000452394 933 ntBASIC5.88□□□□□ -1.47
SOX3P41225 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX3P41225 OR9A1P-202ENST00000484361 945 ntBASIC5.88□□□□□ -1.47
SOX3P41225 AC021006.1-201ENST00000489849 553 ntBASIC5.88□□□□□ -1.47
SOX3P41225 AC122718.2-201ENST00000505325 591 ntBASIC5.88□□□□□ -1.47
SOX3P41225 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX3P41225 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX3P41225 AC018797.1-201ENST00000510791 255 ntBASIC5.88□□□□□ -1.47
SOX3P41225 RNA5SP206-201ENST00000516703 121 ntBASIC5.88□□□□□ -1.47
SOX3P41225 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.88□□□□□ -1.47
SOX3P41225 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 AC115989.2-201ENST00000578640 563 ntBASIC5.88□□□□□ -1.47
SOX3P41225 RPSAP75-201ENST00000605848 301 ntBASIC5.88□□□□□ -1.47
SOX3P41225 uc_338.31-201ENST00000615595 186 ntBASIC5.88□□□□□ -1.47
SOX3P41225 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX3P41225 AL591926.1-201ENST00000620542 217 ntBASIC5.88□□□□□ -1.47
SOX3P41225 EEF1A1P9-201ENST00000514975 1383 ntBASIC5.88□□□□□ -1.47
SOX3P41225 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.88□□□□□ -1.47
SOX3P41225 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX3P41225 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
SOX3P41225 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX3P41225 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
SOX3P41225 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 RBBP4P5-201ENST00000398583 1266 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AL157702.1-201ENST00000398764 426 ntBASIC5.87□□□□□ -1.47
SOX3P41225 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX3P41225 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.87□□□□□ -1.47
SOX3P41225 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX3P41225 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX3P41225 RPL5P12-201ENST00000477071 851 ntBASIC5.87□□□□□ -1.47
SOX3P41225 RN7SL714P-201ENST00000487050 298 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AC091917.2-201ENST00000505002 744 ntBASIC5.87□□□□□ -1.47
SOX3P41225 ZNF519P4-201ENST00000514008 125 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.87□□□□□ -1.47
SOX3P41225 COX6B1P4-201ENST00000519826 484 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX3P41225 NPIPB14P-203ENST00000532298 987 ntBASIC5.87□□□□□ -1.47
SOX3P41225 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX3P41225 AC007494.1-201ENST00000562293 760 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AC004232.2-201ENST00000574245 821 ntBASIC5.87□□□□□ -1.47
SOX3P41225 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.87□□□□□ -1.47
SOX3P41225 AC024589.2-201ENST00000605642 1294 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX3P41225 AL352984.2-201ENST00000611153 546 ntBASIC5.87□□□□□ -1.47
SOX3P41225 AL352984.2-202ENST00000613699 155 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms