Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AC233724.10-201ENST00000510454 409 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AP003461.1-201ENST00000528866 78 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 OR4C1P-201ENST00000530880 937 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 NF1P12-201ENST00000549593 583 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AGGF1P7-201ENST00000562369 913 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 MIR1273F-201ENST00000580581 99 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 HIRAP1-201ENST00000605318 787 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 RN7SL778P-201ENST00000607160 297 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AP000238.1-201ENST00000608759 426 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AL592148.2-201ENST00000612210 372 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 KYNUP2-201ENST00000582280 1329 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 LRRC37A15P-201ENST00000514785 1355 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 EEF1A1P16-201ENST00000325349 1414 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 WASF5P-205ENST00000428639 1455 ntBASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC8.17□□□□□ -1.1
TRAIPQ9BWF2 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 PEX19-201ENST00000368072 3661 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 Y_RNA.465-201ENST00000384293 102 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 OOSP1-201ENST00000398992 1270 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AL590290.1-201ENST00000405336 380 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 MIR1303-201ENST00000408625 86 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC004986.1-201ENST00000414855 607 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 CYP4F34P-201ENST00000425951 481 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AL451074.4-201ENST00000447545 470 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 NECAP1P2-201ENST00000455668 727 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 SNORA35.1-201ENST00000458908 128 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 RPL35AP19-201ENST00000469425 329 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC009153.1-201ENST00000485799 496 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 MTCO3P28-201ENST00000513351 515 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 FABP5P12-201ENST00000515543 389 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 SCARNA20.1-201ENST00000516009 138 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 TMCC1P1-201ENST00000518897 1980 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 OR9L1P-201ENST00000529493 933 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 OR6M3P-201ENST00000531567 700 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC135279.1-201ENST00000543493 504 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 HMGN2P47-201ENST00000559378 272 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 LINC01572-204ENST00000570035 831 ntTSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 EIF1-207ENST00000591776 797 ntTSL 4 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC068790.7-201ENST00000602347 528 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AL109653.1-201ENST00000603091 248 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AL353778.1-201ENST00000603149 408 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AC005252.1-201ENST00000604518 1063 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AP001554.1-201ENST00000604533 376 ntBASIC8.16□□□□□ -1.1
TRAIPQ9BWF2 AL451064.1-201ENST00000607718 471 ntBASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms