Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.29□□□□□ -1.4
VPS35Q96QK1 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
VPS35Q96QK1 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 AL359885.1-201ENST00000415786 903 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 RPL7AP14-201ENST00000424041 802 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 VN1R20P-201ENST00000425215 966 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC112492.2-201ENST00000432774 1030 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 REG1CP-206ENST00000447469 496 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 RN7SL326P-201ENST00000477493 296 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 OR9A1P-202ENST00000484361 945 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 CR383656.1-201ENST00000484916 377 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC093815.1-201ENST00000508637 280 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 OR4D12P-201ENST00000509361 911 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC005632.2-201ENST00000564271 828 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC091193.1-201ENST00000604640 448 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 MIR7159-201ENST00000620587 66 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
VPS35Q96QK1 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
VPS35Q96QK1 AC006213.6-201ENST00000623722 4179 ntBASIC6.28□□□□□ -1.4
VPS35Q96QK1 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.4
VPS35Q96QK1 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 RNA5SP478-201ENST00000364657 115 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 AL157702.1-201ENST00000398764 426 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 RNU6-233P-201ENST00000410845 141 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 UBE2V1P14-201ENST00000415815 558 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 CYP4F30P-202ENST00000420048 405 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AC094019.1-201ENST00000434678 472 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 CXCR2P1-202ENST00000443392 1074 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 RN7SL552P-201ENST00000462094 276 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 RN7SL362P-201ENST00000494228 267 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 AC106822.1-201ENST00000502647 526 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AL445649.1-201ENST00000615941 691 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 IMMTP1-201ENST00000435590 2219 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
VPS35Q96QK1 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
VPS35Q96QK1 AC027575.3-201ENST00000583058 2747 ntBASIC6.27□□□□□ -1.41
VPS35Q96QK1 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms