Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RNA5SP418-201ENST00000515951 117 ntBASIC6.05□□□□□ -1.44
PKNOX1P55347 SNORA81.2-201ENST00000516868 170 ntBASIC6.05□□□□□ -1.44
PKNOX1P55347 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
PKNOX1P55347 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.05□□□□□ -1.44
PKNOX1P55347 AC068408.1-201ENST00000577406 1144 ntBASIC6.05□□□□□ -1.44
PKNOX1P55347 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.05□□□□□ -1.44
PKNOX1P55347 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.05□□□□□ -1.44
PKNOX1P55347 AC009237.12-201ENST00000604755 742 ntBASIC6.05□□□□□ -1.44
PKNOX1P55347 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.05□□□□□ -1.44
PKNOX1P55347 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
PKNOX1P55347 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.05□□□□□ -1.44
PKNOX1P55347 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.05□□□□□ -1.44
PKNOX1P55347 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
PKNOX1P55347 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
PKNOX1P55347 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
PKNOX1P55347 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
PKNOX1P55347 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
PKNOX1P55347 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
PKNOX1P55347 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
PKNOX1P55347 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
PKNOX1P55347 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.04□□□□□ -1.44
PKNOX1P55347 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC6.04□□□□□ -1.44
PKNOX1P55347 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 AP002512.4-202ENST00000641599 4530 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
PKNOX1P55347 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 SNORA43.1-201ENST00000364863 140 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 MEAF6P1-201ENST00000416092 327 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AL354707.3-201ENST00000427308 331 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.04□□□□□ -1.44
PKNOX1P55347 AC234771.4-201ENST00000441416 730 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 RPL36AP55-201ENST00000454114 305 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 RPS7P11-201ENST00000484240 586 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 RN7SL267P-201ENST00000485107 261 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 PPP1R11P1-201ENST00000486095 376 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC093664.1-201ENST00000511779 289 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.04□□□□□ -1.44
PKNOX1P55347 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 RPL41P2-201ENST00000544920 409 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.04□□□□□ -1.44
PKNOX1P55347 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.04□□□□□ -1.44
PKNOX1P55347 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 AC026898.1-201ENST00000586404 571 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC020916.2-201ENST00000591242 360 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.04□□□□□ -1.44
PKNOX1P55347 AP001267.4-201ENST00000602598 545 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC004890.3-201ENST00000605566 1095 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC010998.3-201ENST00000613871 631 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 MIR6737-201ENST00000617385 70 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 AC068213.1-201ENST00000625124 226 ntBASIC6.04□□□□□ -1.44
PKNOX1P55347 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
PKNOX1P55347 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
PKNOX1P55347 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PKNOX1P55347 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.03□□□□□ -1.44
PKNOX1P55347 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PKNOX1P55347 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
PKNOX1P55347 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.03□□□□□ -1.44
PKNOX1P55347 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.03□□□□□ -1.44
PKNOX1P55347 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
PKNOX1P55347 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
PKNOX1P55347 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PKNOX1P55347 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.03□□□□□ -1.44
PKNOX1P55347 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PKNOX1P55347 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.03□□□□□ -1.44
PKNOX1P55347 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
PKNOX1P55347 AC022306.1-201ENST00000560489 1562 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
PKNOX1P55347 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC6.03□□□□□ -1.44
PKNOX1P55347 VIM2P-201ENST00000402383 1294 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 AL096800.1-201ENST00000405326 893 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 MIR1266-201ENST00000408125 84 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.03□□□□□ -1.44
PKNOX1P55347 AL132671.1-201ENST00000415736 308 ntTSL 3 BASIC6.03□□□□□ -1.44
PKNOX1P55347 AC002127.1-201ENST00000421305 225 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PKNOX1P55347 GPN3P1-201ENST00000423883 535 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 NPM1P25-201ENST00000429734 854 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.03□□□□□ -1.44
PKNOX1P55347 GTF3AP6-201ENST00000432585 986 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 GTF2IP14-201ENST00000441415 586 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 HMGN1P32-201ENST00000441744 256 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 RPL31P11-202ENST00000454082 372 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 RAB28P2-201ENST00000454299 641 ntBASIC6.03□□□□□ -1.44
PKNOX1P55347 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms