Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
HOXC9P31274 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC8.13□□□□□ -1.11
HOXC9P31274 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HOXC9P31274 Z93929.1-201ENST00000418200 1475 ntBASIC8.13□□□□□ -1.11
HOXC9P31274 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC8.13□□□□□ -1.11
HOXC9P31274 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
HOXC9P31274 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC8.13□□□□□ -1.11
HOXC9P31274 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXC9P31274 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 MAPK10-365ENST00000641902 3825 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXC9P31274 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXC9P31274 RNA5SP375-201ENST00000362975 119 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXC9P31274 AC093155.2-201ENST00000420734 937 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 KIF4CP-201ENST00000422742 1279 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC8.12□□□□□ -1.11
HOXC9P31274 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC8.12□□□□□ -1.11
HOXC9P31274 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXC9P31274 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC8.12□□□□□ -1.11
HOXC9P31274 NPM1P19-201ENST00000450070 712 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXC9P31274 RPS27AP3-201ENST00000453803 454 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 SETP4-201ENST00000455717 868 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 AC073594.1-201ENST00000462065 364 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC8.12□□□□□ -1.11
HOXC9P31274 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXC9P31274 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC8.12□□□□□ -1.11
HOXC9P31274 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC8.12□□□□□ -1.11
HOXC9P31274 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXC9P31274 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC8.12□□□□□ -1.11
HOXC9P31274 AL352984.2-201ENST00000611153 546 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 AC004477.3-201ENST00000614061 590 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 AC022726.2-201ENST00000634673 547 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 AC116667.2-201ENST00000641075 823 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 NCOA4P3-201ENST00000513203 1877 ntBASIC8.12□□□□□ -1.11
HOXC9P31274 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
HOXC9P31274 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXC9P31274 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
HOXC9P31274 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
HOXC9P31274 ING3-204ENST00000431467 1447 ntTSL 2 BASIC8.12□□□□□ -1.11
HOXC9P31274 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXC9P31274 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXC9P31274 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXC9P31274 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC8.11□□□□□ -1.11
HOXC9P31274 AL731556.1-201ENST00000394628 3711 ntBASIC8.11□□□□□ -1.11
HOXC9P31274 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXC9P31274 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXC9P31274 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
HOXC9P31274 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXC9P31274 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
HOXC9P31274 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
HOXC9P31274 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
HOXC9P31274 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC8.11□□□□□ -1.11
HOXC9P31274 OR7E101P-201ENST00000400428 513 ntBASIC8.11□□□□□ -1.11
HOXC9P31274 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC8.11□□□□□ -1.11
HOXC9P31274 BX119321.1-201ENST00000428912 797 ntBASIC8.11□□□□□ -1.11
HOXC9P31274 CCNB1IP1P1-201ENST00000428976 839 ntBASIC8.11□□□□□ -1.11
HOXC9P31274 BMS1P10-201ENST00000443754 1120 ntBASIC8.11□□□□□ -1.11
HOXC9P31274 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC8.11□□□□□ -1.11
HOXC9P31274 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC8.11□□□□□ -1.11
HOXC9P31274 RNA5SP400-201ENST00000517155 111 ntBASIC8.11□□□□□ -1.11
HOXC9P31274 TMEM97P2-201ENST00000517841 403 ntBASIC8.11□□□□□ -1.11
HOXC9P31274 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXC9P31274 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC8.11□□□□□ -1.11
HOXC9P31274 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXC9P31274 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC8.11□□□□□ -1.11
HOXC9P31274 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXC9P31274 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC8.11□□□□□ -1.11
HOXC9P31274 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC8.11□□□□□ -1.11
HOXC9P31274 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
HOXC9P31274 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC8.11□□□□□ -1.11
HOXC9P31274 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
HOXC9P31274 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 NEPNP-201ENST00000404786 1371 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC8.1□□□□□ -1.11
HOXC9P31274 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
HOXC9P31274 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
HOXC9P31274 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC8.1□□□□□ -1.11
HOXC9P31274 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
HOXC9P31274 FAM32BP-201ENST00000344033 333 ntBASIC8.1□□□□□ -1.11
HOXC9P31274 RN7SKP77-201ENST00000363261 353 ntBASIC8.1□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms