Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC025287.2-201ENST00000621911 668 ntBASIC7.5□□□□□ -1.21
MSX1P28360 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC7.5□□□□□ -1.21
MSX1P28360 RECQL5-203ENST00000420326 3710 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 ZMIZ1-AS1-201ENST00000428862 2851 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 LINC02035-201ENST00000610128 5476 ntBASIC7.5□□□□□ -1.21
MSX1P28360 DCX-201ENST00000356220 3019 ntAPPRIS ALT1 TSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 AC092646.2-201ENST00000431242 2095 ntBASIC7.5□□□□□ -1.21
MSX1P28360 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 FO393401.2-201ENST00000422009 1307 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 NASP-201ENST00000350030 3207 ntAPPRIS P4 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 C7orf73-202ENST00000507606 2450 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 NLRP5-201ENST00000390649 3888 ntAPPRIS P2 TSL 1 (best) BASIC7.5□□□□□ -1.21
MSX1P28360 NLRP5-203ENST00000621651 3885 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
MSX1P28360 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 GART-201ENST00000361093 2149 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 AC007614.2-201ENST00000569877 1851 ntBASIC7.49□□□□□ -1.21
MSX1P28360 CNTRL-212ENST00000613863 2418 ntTSL 5 BASIC7.49□□□□□ -1.21
MSX1P28360 ZNF19-201ENST00000288177 3220 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 EGF-204ENST00000503392 3642 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 RBM46-202ENST00000510397 3626 ntTSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 ADGRE1-205ENST00000450315 2567 ntTSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 AL590763.1-201ENST00000398297 1545 ntBASIC7.49□□□□□ -1.21
MSX1P28360 MTCO1P23-201ENST00000415223 1526 ntBASIC7.49□□□□□ -1.21
MSX1P28360 CR383658.2-201ENST00000547576 1525 ntBASIC7.49□□□□□ -1.21
MSX1P28360 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 TTC21A-205ENST00000440121 3941 ntAPPRIS P3 TSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 BBS4-201ENST00000268057 2490 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
MSX1P28360 AC103591.2-201ENST00000265259 766 ntBASIC7.49□□□□□ -1.21
MSX1P28360 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
MSX1P28360 Y_RNA.160-201ENST00000363677 92 ntBASIC7.49□□□□□ -1.21
MSX1P28360 RNU6-621P-201ENST00000364752 109 ntBASIC7.49□□□□□ -1.21
MSX1P28360 Y_RNA.302-201ENST00000364997 102 ntBASIC7.49□□□□□ -1.21
MSX1P28360 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 Y_RNA.402-201ENST00000383972 102 ntBASIC7.49□□□□□ -1.21
MSX1P28360 RNU6-1227P-201ENST00000383981 107 ntBASIC7.49□□□□□ -1.21
MSX1P28360 Y_RNA.573-201ENST00000384763 105 ntBASIC7.49□□□□□ -1.21
MSX1P28360 MIR30C1-201ENST00000385227 89 ntBASIC7.49□□□□□ -1.21
MSX1P28360 IGKV3-15-201ENST00000390252 442 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
MSX1P28360 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 LSM5-205ENST00000409952 687 ntTSL 4 BASIC7.49□□□□□ -1.21
MSX1P28360 RN7SKP39-201ENST00000410773 322 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AC019181.1-201ENST00000417151 310 ntBASIC7.49□□□□□ -1.21
MSX1P28360 SDCBPP3-201ENST00000419629 891 ntBASIC7.49□□□□□ -1.21
MSX1P28360 EEF1A1P34-201ENST00000419888 1267 ntBASIC7.49□□□□□ -1.21
MSX1P28360 PPIAP25-201ENST00000420177 540 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AC009237.2-201ENST00000421358 284 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AL590729.1-201ENST00000427046 573 ntTSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 CCNT2-AS1-203ENST00000428857 677 ntTSL 4 BASIC7.49□□□□□ -1.21
MSX1P28360 AC104850.1-201ENST00000435940 476 ntBASIC7.49□□□□□ -1.21
MSX1P28360 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC7.49□□□□□ -1.21
MSX1P28360 OR3B1P-201ENST00000437536 893 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AL135929.1-201ENST00000449287 552 ntBASIC7.49□□□□□ -1.21
MSX1P28360 Z82173.1-201ENST00000453924 484 ntTSL 3 BASIC7.49□□□□□ -1.21
MSX1P28360 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 RN7SL508P-201ENST00000464472 303 ntBASIC7.49□□□□□ -1.21
MSX1P28360 RPL23AP37-201ENST00000479658 549 ntBASIC7.49□□□□□ -1.21
MSX1P28360 LINC00518-202ENST00000479822 906 ntTSL 3 BASIC7.49□□□□□ -1.21
MSX1P28360 AC079841.1-201ENST00000481228 950 ntBASIC7.49□□□□□ -1.21
MSX1P28360 RN7SL241P-201ENST00000482973 236 ntBASIC7.49□□□□□ -1.21
MSX1P28360 RN7SL862P-201ENST00000491550 298 ntBASIC7.49□□□□□ -1.21
MSX1P28360 RPL7AP2-201ENST00000496515 740 ntBASIC7.49□□□□□ -1.21
MSX1P28360 PDLIM1P4-201ENST00000504327 1006 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AC122718.2-201ENST00000505325 591 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC7.49□□□□□ -1.21
MSX1P28360 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC7.49□□□□□ -1.21
MSX1P28360 AC078950.1-204ENST00000540635 523 ntTSL 3 BASIC7.49□□□□□ -1.21
MSX1P28360 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC7.49□□□□□ -1.21
MSX1P28360 EIF4A1P4-201ENST00000550578 1213 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AC125611.2-201ENST00000551907 647 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AL133457.1-201ENST00000564251 987 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AC009171.1-201ENST00000572673 266 ntBASIC7.49□□□□□ -1.21
MSX1P28360 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC7.49□□□□□ -1.21
MSX1P28360 AC012146.2-201ENST00000576545 416 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC7.49□□□□□ -1.21
MSX1P28360 LLPHP1-201ENST00000603571 367 ntBASIC7.49□□□□□ -1.21
MSX1P28360 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC7.49□□□□□ -1.21
MSX1P28360 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC7.49□□□□□ -1.21
MSX1P28360 AC245033.3-201ENST00000617986 224 ntBASIC7.49□□□□□ -1.21
MSX1P28360 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC7.49□□□□□ -1.21
MSX1P28360 AC018793.5-201ENST00000640302 585 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
MSX1P28360 OR52B5P-202ENST00000641118 1110 ntBASIC7.49□□□□□ -1.21
MSX1P28360 TTC33-201ENST00000337702 2612 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
MSX1P28360 VN2R3P-201ENST00000422626 1412 ntBASIC7.49□□□□□ -1.21
MSX1P28360 AL391380.1-201ENST00000439300 1432 ntBASIC7.49□□□□□ -1.21
MSX1P28360 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC7.49□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms