Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 RPS18P1-201ENST00000447840 458 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC004890.1-201ENST00000461005 181 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC090589.1-201ENST00000473109 362 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC015524.1-201ENST00000491585 472 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC104629.1-201ENST00000494226 508 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 MIR4271-201ENST00000582451 67 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC015819.1-201ENST00000613588 663 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 MIR7109-201ENST00000613748 65 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AL031658.2-201ENST00000616850 651 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AC110597.1-201ENST00000562669 3176 ntBASIC6.7□□□□□ -1.34
DKK3Q9UBP4 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
DKK3Q9UBP4 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC012078.1-201ENST00000405035 1646 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 OR7A2P-201ENST00000304105 930 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 RNA5SP85-201ENST00000365378 119 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AL133260.1-201ENST00000405720 405 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AL359092.1-201ENST00000417156 265 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 FAR1P1-201ENST00000427163 934 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AL590623.1-201ENST00000427864 105 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 GAPDHP33-201ENST00000443168 1013 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 RPS15AP29-201ENST00000445539 400 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 MTATP6P9-201ENST00000515039 680 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 RN7SKP183-201ENST00000517169 324 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AP003049.1-201ENST00000529418 457 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AL049874.4-201ENST00000557593 255 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 MIR4732-201ENST00000581873 76 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AL683813.2-201ENST00000605245 502 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC092944.2-201ENST00000605443 889 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC004241.2-201ENST00000614562 444 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 AC007603.3-201ENST00000636915 979 ntBASIC6.69□□□□□ -1.34
DKK3Q9UBP4 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
DKK3Q9UBP4 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 391.9 ms