Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AL590128.1-201ENST00000433407 286 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 HLA-DPA3-207ENST00000454398 229 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 RPS26P39-201ENST00000469206 341 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 RBBP4P1-201ENST00000502424 1276 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 SUMO2P19-201ENST00000518920 295 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 EEF1B2P2-201ENST00000519625 676 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC245128.3-201ENST00000594721 748 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 SNORA35B-201ENST00000607417 129 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 SDR42E1P1-201ENST00000611327 477 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AL391597.1-201ENST00000618707 694 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AC127024.6-201ENST00000621598 424 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 AL354702.2-202ENST00000641481 890 ntBASIC6.35□□□□□ -1.39
COL28A1Q2UY09 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.35□□□□□ -1.39
COL28A1Q2UY09 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 RNU4-23P-201ENST00000362839 140 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 NOX1-203ENST00000372964 661 ntTSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 RPL9P21-201ENST00000392269 505 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC003045.1-201ENST00000398779 713 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 RPS10P21-201ENST00000430654 475 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC115223.1-201ENST00000466377 870 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC008410.1-201ENST00000483777 339 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC026826.1-201ENST00000493002 361 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 ZNF519P4-201ENST00000514008 125 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC011352.2-201ENST00000514574 1016 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC005632.2-201ENST00000564271 828 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC087575.1-201ENST00000585087 229 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AL589863.1-201ENST00000595383 631 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC114477.1-201ENST00000605097 605 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AP003789.1-201ENST00000617737 605 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC073488.6-201ENST00000632293 754 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC083806.2-201ENST00000617795 2685 ntBASIC6.34□□□□□ -1.39
COL28A1Q2UY09 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL28A1Q2UY09 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL28A1Q2UY09 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.34□□□□□ -1.4
COL28A1Q2UY09 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL28A1Q2UY09 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL28A1Q2UY09 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms