Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.92□□□□□ -1.46
FOXA1P55317 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 U91328.4-201ENST00000608919 517 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 MIR6885-201ENST00000612241 66 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 AC211486.4-201ENST00000621495 113 ntBASIC5.92□□□□□ -1.46
FOXA1P55317 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC5.92□□□□□ -1.46
FOXA1P55317 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.92□□□□□ -1.46
FOXA1P55317 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
FOXA1P55317 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
FOXA1P55317 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
FOXA1P55317 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 AC024651.2-201ENST00000562480 2098 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
FOXA1P55317 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 RNA5SP485-201ENST00000365053 119 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC5.91□□□□□ -1.46
FOXA1P55317 AL022324.2-201ENST00000434827 780 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 RPS3AP38-201ENST00000435889 763 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 AL390879.1-201ENST00000439143 386 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 AC092601.1-201ENST00000444526 383 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 WDR82P2-201ENST00000444540 928 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 AL162739.1-201ENST00000450606 307 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 HIGD1AP16-201ENST00000450986 258 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 AC124891.1-201ENST00000536322 519 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 MIR744-201ENST00000578242 98 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 MIR212-201ENST00000586026 110 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 AC119674.1-202ENST00000641333 1860 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.91□□□□□ -1.46
FOXA1P55317 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.91□□□□□ -1.46
FOXA1P55317 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
FOXA1P55317 ZNF969P-201ENST00000510345 2341 ntBASIC5.91□□□□□ -1.46
FOXA1P55317 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.91□□□□□ -1.46
FOXA1P55317 AL161756.3-201ENST00000641216 2071 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
FOXA1P55317 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
FOXA1P55317 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.9□□□□□ -1.46
FOXA1P55317 TTC41P-205ENST00000551270 3963 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
FOXA1P55317 FUNDC2P3-201ENST00000334716 533 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXA1P55317 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
FOXA1P55317 YWHAZP4-201ENST00000392459 708 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXA1P55317 AL360013.1-201ENST00000419031 858 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
FOXA1P55317 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 POU5F1P5-201ENST00000445059 658 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
FOXA1P55317 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXA1P55317 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
FOXA1P55317 RN7SL352P-201ENST00000466002 277 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 RPL34P33-201ENST00000486062 334 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
FOXA1P55317 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.9□□□□□ -1.46
FOXA1P55317 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXA1P55317 CYCSP25-201ENST00000525280 316 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 TDGP1-201ENST00000543961 1229 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 AL049779.3-201ENST00000557141 606 ntBASIC5.9□□□□□ -1.46
FOXA1P55317 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC5.9□□□□□ -1.46
FOXA1P55317 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.9□□□□□ -1.46
FOXA1P55317 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC5.9□□□□□ -1.46
FOXA1P55317 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.9□□□□□ -1.46
FOXA1P55317 SNORA74.4-201ENST00000607595 199 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms