Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 THBS3-201ENST00000368378 3145 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC7.15□□□□□ -1.27
COL8A1P27658 AL353763.1-201ENST00000624467 1628 ntBASIC7.15□□□□□ -1.27
COL8A1P27658 CYP4A11-203ENST00000371905 1725 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 WDPCP-206ENST00000409562 3544 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC7.15□□□□□ -1.27
COL8A1P27658 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 MAP3K7CL-203ENST00000341618 1855 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 ZNF345-202ENST00000420450 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 FBXO11-202ENST00000403359 4055 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 CFAP57-201ENST00000372492 4244 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
COL8A1P27658 AC002090.1-201ENST00000625000 2138 ntBASIC7.15□□□□□ -1.27
COL8A1P27658 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 AOAH-211ENST00000617537 2381 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL8A1P27658 NVL-202ENST00000340871 2431 ntTSL 2 BASIC7.15□□□□□ -1.27
COL8A1P27658 AC068733.1-202ENST00000531479 2456 ntBASIC7.15□□□□□ -1.27
COL8A1P27658 WISP3-204ENST00000368666 2700 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 ARMC3-204ENST00000409983 2779 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 GLI1-201ENST00000228682 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 RPL7A-201ENST00000315731 680 ntTSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
COL8A1P27658 RNU6-560P-201ENST00000364007 108 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 RNA5SP302-201ENST00000364896 100 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AC007068.1-201ENST00000396690 844 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AL139100.1-201ENST00000408001 498 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 SH3D19-202ENST00000409252 4888 ntAPPRIS P3 TSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 EEF1A1P11-201ENST00000415278 1389 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 AL591896.1-201ENST00000420211 491 ntTSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 FMO7P-201ENST00000436045 768 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 KRT23-202ENST00000436344 1485 ntTSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 OR7E125P-201ENST00000443450 846 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AC005539.1-201ENST00000443768 1479 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AL353194.1-201ENST00000451507 441 ntTSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 ZNF33BP1-201ENST00000452497 1834 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 RPS29P5-201ENST00000452777 171 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 RPLP0P1-201ENST00000457002 361 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 EVI2A-203ENST00000462804 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 AC007849.1-201ENST00000469794 513 ntTSL 4 BASIC7.14□□□□□ -1.27
COL8A1P27658 OR9A1P-202ENST00000484361 945 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 FAM172BP-201ENST00000487497 1089 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 SUMO1P1-201ENST00000497904 306 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 PRR27-202ENST00000502294 3007 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 CCDC149-204ENST00000504487 3869 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC017037.2-201ENST00000513850 890 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AC138356.2-201ENST00000521192 667 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AC009806.1-201ENST00000526112 519 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 OR4A11P-201ENST00000529557 906 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC7.14□□□□□ -1.27
COL8A1P27658 NUSAP1-212ENST00000560747 2256 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 AL583859.2-202ENST00000602311 505 ntTSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC124303.1-201ENST00000605703 360 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AC106028.5-201ENST00000610332 395 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 MIR7162-201ENST00000611134 69 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 MIR6889-201ENST00000613185 59 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 HTR1DP1-201ENST00000616500 888 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC109454.4-201ENST00000623411 649 ntBASIC7.14□□□□□ -1.27
COL8A1P27658 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 MAPK10-240ENST00000639175 2596 ntAPPRIS P2 TSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 MPP7-203ENST00000375732 5063 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 MSRB3-212ENST00000614640 4270 ntAPPRIS P1 TSL 3 BASIC7.14□□□□□ -1.27
COL8A1P27658 LINC00672-201ENST00000583195 3692 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 AC113189.6-201ENST00000636696 3591 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
COL8A1P27658 DICER1-204ENST00000527414 6179 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL8A1P27658 CCPG1-212ENST00000569205 2970 ntTSL 2 BASIC7.14□□□□□ -1.27
COL8A1P27658 ACTR6-201ENST00000188312 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 SLFN12-206ENST00000452764 2423 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
COL8A1P27658 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 LINC01748-205ENST00000635616 2143 ntTSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 NDUFB5-214ENST00000493866 4046 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC7.13□□□□□ -1.27
COL8A1P27658 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 LINC02408-201ENST00000400306 1766 ntTSL 2 BASIC7.13□□□□□ -1.27
COL8A1P27658 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 TTLL9-206ENST00000535842 3261 ntAPPRIS P2 TSL 5 BASIC7.13□□□□□ -1.27
COL8A1P27658 SELENON-205ENST00000630065 2994 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL8A1P27658 AC079097.1-201ENST00000512187 1399 ntBASIC7.13□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms