Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 AC011416.1-201ENST00000514947 1732 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC5.94□□□□□ -1.46
COL5A1P20908 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 AC092111.1-201ENST00000618256 3358 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL5A1P20908 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 OR11H13P-201ENST00000359695 979 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 RN7SKP162-201ENST00000363605 345 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 KIF4CP-201ENST00000422742 1279 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 AL122020.1-201ENST00000472287 459 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 RPS23P1-201ENST00000491662 432 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC5.94□□□□□ -1.46
COL5A1P20908 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.94□□□□□ -1.46
COL5A1P20908 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.94□□□□□ -1.46
COL5A1P20908 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.94□□□□□ -1.46
COL5A1P20908 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.94□□□□□ -1.46
COL5A1P20908 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 MIR1273E-201ENST00000581165 102 ntBASIC5.94□□□□□ -1.46
COL5A1P20908 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.94□□□□□ -1.46
COL5A1P20908 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL5A1P20908 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL5A1P20908 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.93□□□□□ -1.46
COL5A1P20908 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
COL5A1P20908 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 RPS2P45-201ENST00000469997 2057 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 AC027088.4-201ENST00000611559 1947 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 MIR585-201ENST00000384887 94 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 AL445238.1-204ENST00000400311 463 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 BMS1P17-202ENST00000416720 316 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC5.93□□□□□ -1.46
COL5A1P20908 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.93□□□□□ -1.46
COL5A1P20908 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.93□□□□□ -1.46
COL5A1P20908 OR6M2P-201ENST00000529831 871 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 RN7SL787P-201ENST00000613000 284 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 AC096861.1-201ENST00000616652 240 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 TCL6_3.1-201ENST00000619064 137 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 AC109780.1-201ENST00000451768 1344 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
COL5A1P20908 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.93□□□□□ -1.46
COL5A1P20908 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL5A1P20908 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC5.93□□□□□ -1.46
COL5A1P20908 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 MARK2P4-201ENST00000503381 2380 ntBASIC5.93□□□□□ -1.46
COL5A1P20908 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC5.93□□□□□ -1.46
COL5A1P20908 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL5A1P20908 MTHFD2P5-201ENST00000320415 844 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.92□□□□□ -1.46
COL5A1P20908 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC5.92□□□□□ -1.46
COL5A1P20908 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.92□□□□□ -1.46
COL5A1P20908 AL121776.1-201ENST00000429337 372 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 VN1R110P-201ENST00000438988 971 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.92□□□□□ -1.46
COL5A1P20908 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
COL5A1P20908 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 CYCSP1-201ENST00000604815 315 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 RPL12P48-201ENST00000605620 304 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 AL137067.2-201ENST00000621202 131 ntBASIC5.92□□□□□ -1.46
COL5A1P20908 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.92□□□□□ -1.46
COL5A1P20908 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
COL5A1P20908 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL5A1P20908 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL5A1P20908 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms