Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC110373.1-201ENST00000505994 3505 ntBASIC6.33□□□□□ -1.4
VPS35Q96QK1 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.33□□□□□ -1.4
VPS35Q96QK1 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
VPS35Q96QK1 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 YWHAZP4-201ENST00000392459 708 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 THEM7P-201ENST00000419556 672 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 NPM1P25-201ENST00000429734 854 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 AL451136.1-201ENST00000435399 325 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 GTF2IP14-201ENST00000441415 586 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 EIF4E2P2-201ENST00000492033 736 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 HMGN1P16-201ENST00000508308 283 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 KHDC1P1-201ENST00000511053 508 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 KCTD9P4-201ENST00000526766 1166 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 AC073916.1-201ENST00000545095 130 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 MIR4301-201ENST00000577203 66 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 AL031658.2-201ENST00000616850 651 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 CASC19-246ENST00000641625 1606 ntBASIC6.32□□□□□ -1.4
VPS35Q96QK1 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.32□□□□□ -1.4
VPS35Q96QK1 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
VPS35Q96QK1 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 OSTCP4-201ENST00000424397 449 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 POU5F1P5-201ENST00000445059 658 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC005165.2-201ENST00000466070 380 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 H3F3AP5-201ENST00000475267 429 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 RN7SL369P-201ENST00000477138 299 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 RPL12P31-201ENST00000478433 450 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 RN7SL714P-201ENST00000487050 298 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 RN7SL230P-201ENST00000580835 303 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC137695.1-201ENST00000604126 489 ntBASIC6.31□□□□□ -1.4
VPS35Q96QK1 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.31□□□□□ -1.4
VPS35Q96QK1 AL008723.3-201ENST00000608926 449 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms