Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC42Q96M95 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
CCDC42Q96M95 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC42Q96M95 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC130360.2-201ENST00000533477 1556 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC42Q96M95 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC42Q96M95 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 SNORA7A-201ENST00000384765 139 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AL121977.1-201ENST00000401636 979 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AL117344.1-201ENST00000407196 616 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC092651.1-201ENST00000426110 312 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 GTF2IP14-201ENST00000441415 586 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 BMS1P11-201ENST00000442351 885 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AL158214.1-201ENST00000444423 404 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 BMS1P9-201ENST00000457640 885 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 RN7SL352P-201ENST00000466002 277 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 RN7SL369P-201ENST00000477138 299 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 RN7SL413P-201ENST00000482700 297 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 RNA5SP418-201ENST00000515951 117 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC023080.1-201ENST00000551663 931 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 HNRNPCP1-201ENST00000556181 766 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 MIR4420-201ENST00000583944 77 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AC023206.1-201ENST00000605824 298 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 AL589743.6-201ENST00000611025 117 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC42Q96M95 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC42Q96M95 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
CCDC42Q96M95 AL359955.1-201ENST00000455242 3275 ntBASIC6.65□□□□□ -1.34
CCDC42Q96M95 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.65□□□□□ -1.34
CCDC42Q96M95 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
CCDC42Q96M95 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC42Q96M95 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
CCDC42Q96M95 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.65□□□□□ -1.35
CCDC42Q96M95 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.65□□□□□ -1.35
CCDC42Q96M95 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.65□□□□□ -1.35
CCDC42Q96M95 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
CCDC42Q96M95 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.65□□□□□ -1.35
CCDC42Q96M95 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC018765.1-201ENST00000623357 3446 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 RNA5SP155-201ENST00000411154 129 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 RPL12P16-201ENST00000431098 498 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 AL645939.3-201ENST00000435408 225 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 RN7SL326P-201ENST00000477493 296 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC093664.1-201ENST00000511779 289 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 TPM3P3-201ENST00000521343 354 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC103855.4-201ENST00000533158 265 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 AC018946.1-201ENST00000560578 458 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 SNORA74.4-201ENST00000607595 199 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 AL137067.2-201ENST00000621202 131 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 FANCD2P2-201ENST00000437591 1400 ntBASIC6.64□□□□□ -1.35
CCDC42Q96M95 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC42Q96M95 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
CCDC42Q96M95 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.63□□□□□ -1.35
CCDC42Q96M95 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC42Q96M95 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms