Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC090220.1-201ENST00000593078 1699 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC095038.1-201ENST00000429248 1591 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AL353743.3-201ENST00000442109 1468 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 OR5M2P-202ENST00000641241 4242 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 SNORD16-201ENST00000362803 99 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 RNA5SP355-201ENST00000365317 135 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 SNORA5.1-201ENST00000384275 131 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 SNORA11D-201ENST00000408548 128 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 SNORA11E-201ENST00000408778 128 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 SETP22-201ENST00000412243 957 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AL157884.1-201ENST00000424561 454 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC009362.1-201ENST00000427253 406 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AL354707.3-201ENST00000427308 331 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AL139135.2-201ENST00000445040 433 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 CCNJP1-201ENST00000450600 1149 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 ST13P21-201ENST00000453250 1098 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 RN7SL868P-201ENST00000485915 303 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC009269.1-203ENST00000496414 828 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC106760.2-201ENST00000504159 619 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC011405.1-203ENST00000510110 1067 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC138832.1-201ENST00000522871 556 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 OR6M2P-201ENST00000529831 871 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 RPA2P3-201ENST00000533268 770 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 RPL12P48-201ENST00000605620 304 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC006924.1-201ENST00000610750 559 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AL121768.1-201ENST00000613917 2544 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AP001541.1-201ENST00000623322 1904 ntBASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC28BQ9BUN5 AC010266.2-201ENST00000564741 3255 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 RNA5SP427-201ENST00000365323 119 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC003087.1-201ENST00000412828 499 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 RANP6-201ENST00000413691 644 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC112187.1-201ENST00000455837 479 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 CADM2-AS2-201ENST00000467225 768 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 RPL7L1P7-201ENST00000509986 724 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC010343.2-201ENST00000510162 224 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 IGHVII-51-2-201ENST00000519778 259 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 HNRNPCP8-201ENST00000528764 888 ntBASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC28BQ9BUN5 AC139426.3-201ENST00000605648 2059 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms