Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 RPL24P7-201ENST00000399435 453 ntBASIC1.95□□□□□ -2.1
SYNE1Q8NF91 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 COX6CP7-201ENST00000597056 208 ntBASIC1.95□□□□□ -2.1
SYNE1Q8NF91 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
SYNE1Q8NF91 AL139805.2-201ENST00000455305 2433 ntBASIC1.95□□□□□ -2.1
SYNE1Q8NF91 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC096992.2-201ENST00000609553 1684 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC008410.1-201ENST00000483777 339 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC063943.2-201ENST00000495697 534 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC095052.1-201ENST00000509955 863 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL390726.5-202ENST00000564800 256 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MIR4502-201ENST00000580432 81 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MIR105-2-201ENST00000385083 81 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC023141.9-201ENST00000458734 412 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 RN7SL254P-201ENST00000460609 284 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC007998.1-201ENST00000474156 672 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC074087.1-201ENST00000512059 724 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PLEKHA3P1-201ENST00000598554 894 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MIR6826-201ENST00000617808 98 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC092070.2-203ENST00000598377 3644 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MAPK10-357ENST00000641831 2858 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 RN7SKP292-201ENST00000365522 317 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 C1orf162-202ENST00000369718 915 ntAPPRIS ALT2 TSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 BX119917.1-201ENST00000432517 502 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MED28P4-201ENST00000433137 572 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC114755.4-201ENST00000439114 443 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC060775.1-201ENST00000518241 520 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 DPPA2P4-201ENST00000563717 878 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL136295.6-201ENST00000610486 658 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC016769.4-201ENST00000616893 535 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC129915.3-201ENST00000634128 948 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 UGT2B25P-201ENST00000511504 1586 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SNORD16-201ENST00000362803 99 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 KRTAP3-4P-201ENST00000430780 280 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms