Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 Z99289.3-201ENST00000605586 594 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.88□□□□□ -1.31
USP39Q53GS9 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 MIR7854-201ENST00000620068 65 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.88□□□□□ -1.31
USP39Q53GS9 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC6.88□□□□□ -1.31
USP39Q53GS9 MIR1910-201ENST00000636955 80 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 AC006600.2-201ENST00000624834 2506 ntBASIC6.88□□□□□ -1.31
USP39Q53GS9 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
USP39Q53GS9 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
USP39Q53GS9 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.87□□□□□ -1.31
USP39Q53GS9 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 CDY10P-201ENST00000452415 1567 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 AL121949.2-201ENST00000403446 1548 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 STAG3L4-201ENST00000352103 530 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AL590762.1-201ENST00000391782 432 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC092642.1-201ENST00000392417 425 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AL391419.1-201ENST00000398901 1275 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 UBE2V1P15-201ENST00000407776 448 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 GAPDHP57-201ENST00000424400 585 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.87□□□□□ -1.31
USP39Q53GS9 KCTD9P1-201ENST00000430462 1167 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 RNFT1P2-201ENST00000443064 757 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC6.87□□□□□ -1.31
USP39Q53GS9 RN7SL834P-201ENST00000461450 286 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC106822.1-201ENST00000502647 526 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC6.87□□□□□ -1.31
USP39Q53GS9 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC6.87□□□□□ -1.31
USP39Q53GS9 MTCO3P28-201ENST00000513351 515 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC025857.1-201ENST00000525252 377 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC110056.1-201ENST00000525759 911 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC007068.2-201ENST00000543168 395 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
USP39Q53GS9 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC098935.2-201ENST00000604222 466 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC090116.1-201ENST00000615679 446 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC006328.2-201ENST00000623198 397 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AC012005.2-201ENST00000624333 397 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AL513548.1-201ENST00000562904 1724 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
USP39Q53GS9 ASNSP6-201ENST00000592770 1618 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 CASC19-261ENST00000641853 1638 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.87□□□□□ -1.31
USP39Q53GS9 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
USP39Q53GS9 AC010168.2-201ENST00000562691 5428 ntBASIC6.87□□□□□ -1.31
USP39Q53GS9 AL512329.1-201ENST00000404600 1592 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 RPL31P11-201ENST00000426558 1558 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 AL133243.4-201ENST00000623116 3109 ntBASIC6.86□□□□□ -1.31
USP39Q53GS9 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC6.86□□□□□ -1.31
USP39Q53GS9 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
USP39Q53GS9 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USP39Q53GS9 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms