Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC5.96□□□□□ -1.46
FOXA1P55317 RN7SL267P-201ENST00000485107 261 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC5.96□□□□□ -1.46
FOXA1P55317 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC5.96□□□□□ -1.46
FOXA1P55317 Y_RNA.710-201ENST00000516975 110 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC5.96□□□□□ -1.46
FOXA1P55317 AC131935.1-201ENST00000524621 333 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.96□□□□□ -1.46
FOXA1P55317 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC5.96□□□□□ -1.46
FOXA1P55317 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.96□□□□□ -1.46
FOXA1P55317 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.96□□□□□ -1.46
FOXA1P55317 AC037479.1-201ENST00000558361 625 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
FOXA1P55317 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 IGKV2OR2-7-201ENST00000604652 304 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 CLUHP10-201ENST00000631979 980 ntBASIC5.96□□□□□ -1.46
FOXA1P55317 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.96□□□□□ -1.46
FOXA1P55317 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
FOXA1P55317 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
FOXA1P55317 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
FOXA1P55317 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
FOXA1P55317 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.46
FOXA1P55317 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
FOXA1P55317 AC114876.1-201ENST00000490962 1366 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.95□□□□□ -1.46
FOXA1P55317 AC018717.1-201ENST00000457712 1505 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
FOXA1P55317 RN7SKP257-201ENST00000364525 309 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 OSTCP4-201ENST00000424397 449 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 AL365220.1-201ENST00000432923 399 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 ARMC4P1-201ENST00000438905 707 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 NPM1P23-201ENST00000440193 849 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 OR2L9P-201ENST00000444456 913 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC5.95□□□□□ -1.46
FOXA1P55317 VN2R1P-201ENST00000449668 1743 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 AL034369.1-201ENST00000453808 477 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 AP003385.3-201ENST00000472498 287 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.95□□□□□ -1.46
FOXA1P55317 AC093325.1-201ENST00000508378 326 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 SUMO2P19-201ENST00000518920 295 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.95□□□□□ -1.46
FOXA1P55317 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.95□□□□□ -1.46
FOXA1P55317 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.95□□□□□ -1.46
FOXA1P55317 CASP1P2-201ENST00000526830 1258 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.95□□□□□ -1.46
FOXA1P55317 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC5.95□□□□□ -1.46
FOXA1P55317 RN7SL261P-201ENST00000613441 282 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
FOXA1P55317 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.95□□□□□ -1.46
FOXA1P55317 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.95□□□□□ -1.46
FOXA1P55317 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.95□□□□□ -1.46
FOXA1P55317 CASC19-246ENST00000641625 1606 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
FOXA1P55317 SSXP3-201ENST00000442971 1300 ntBASIC5.95□□□□□ -1.46
FOXA1P55317 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
FOXA1P55317 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
FOXA1P55317 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.95□□□□□ -1.46
FOXA1P55317 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.94□□□□□ -1.46
FOXA1P55317 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
FOXA1P55317 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 AC092070.2-203ENST00000598377 3644 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 RNA5SP77-201ENST00000365394 120 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 SNORD94-201ENST00000386037 137 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AL096800.1-201ENST00000405326 893 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 SNORA77.2-201ENST00000408571 112 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 PTCD2P2-201ENST00000415579 1095 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 NPM1P36-201ENST00000415681 835 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 MTND2P12-201ENST00000417560 1252 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
FOXA1P55317 GPN3P1-201ENST00000423883 535 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.94□□□□□ -1.46
FOXA1P55317 IGLV3-4-201ENST00000432300 244 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.94□□□□□ -1.46
FOXA1P55317 USP24P1-201ENST00000433802 779 ntBASIC5.94□□□□□ -1.46
FOXA1P55317 PSMD8P1-201ENST00000436275 769 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms