Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 NCAM2-202ENST00000400546 8135 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
COL4A4P53420 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
COL4A4P53420 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 AC022034.1-201ENST00000512867 2156 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 LSM5-203ENST00000409782 649 ntTSL 5 BASIC6.58□□□□□ -1.36
COL4A4P53420 AC245884.2-201ENST00000426257 404 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 PPIAP10-201ENST00000438675 458 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 AC092865.4-201ENST00000477936 615 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 RN7SL727P-201ENST00000482164 296 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC6.58□□□□□ -1.36
COL4A4P53420 IGKV2-18-201ENST00000522607 343 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC6.58□□□□□ -1.36
COL4A4P53420 OR10G5P-201ENST00000532733 358 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC6.58□□□□□ -1.36
COL4A4P53420 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.58□□□□□ -1.36
COL4A4P53420 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 AP003119.3-201ENST00000566747 4192 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.58□□□□□ -1.36
COL4A4P53420 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 AC011369.2-201ENST00000624423 1567 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.57□□□□□ -1.36
COL4A4P53420 LRRC37A6P-202ENST00000448648 5444 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.57□□□□□ -1.36
COL4A4P53420 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 TNPO1P2-201ENST00000426249 2665 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 RNA5SP46-201ENST00000362370 120 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL4A4P53420 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 MIR585-201ENST00000384887 94 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 RN7SKP59-201ENST00000410520 314 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.57□□□□□ -1.36
COL4A4P53420 AC002504.1-201ENST00000438281 691 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 FTLP8-201ENST00000446770 267 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC6.57□□□□□ -1.36
COL4A4P53420 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL4A4P53420 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.57□□□□□ -1.36
COL4A4P53420 AC022404.1-201ENST00000555320 273 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.57□□□□□ -1.36
COL4A4P53420 AC011497.2-201ENST00000600255 639 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.57□□□□□ -1.36
COL4A4P53420 AC022726.2-201ENST00000634673 547 ntBASIC6.57□□□□□ -1.36
COL4A4P53420 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL4A4P53420 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
COL4A4P53420 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.57□□□□□ -1.36
COL4A4P53420 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC6.56□□□□□ -1.36
COL4A4P53420 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 TMEM75-201ENST00000624314 2165 ntBASIC6.56□□□□□ -1.36
COL4A4P53420 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 PABPC1P6-201ENST00000445594 1829 ntBASIC6.56□□□□□ -1.36
COL4A4P53420 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 MIR375-201ENST00000362103 64 ntBASIC6.56□□□□□ -1.36
COL4A4P53420 AL445238.1-204ENST00000400311 463 ntBASIC6.56□□□□□ -1.36
COL4A4P53420 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.56□□□□□ -1.36
COL4A4P53420 AL445466.1-201ENST00000448432 357 ntBASIC6.56□□□□□ -1.36
COL4A4P53420 OR4H6P-201ENST00000563771 921 ntBASIC6.56□□□□□ -1.36
COL4A4P53420 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.56□□□□□ -1.36
COL4A4P53420 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.56□□□□□ -1.36
COL4A4P53420 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
COL4A4P53420 Z93929.1-201ENST00000418200 1475 ntBASIC6.56□□□□□ -1.36
COL4A4P53420 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 ATP8B1-201ENST00000283684 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL4A4P53420 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms