Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
PTPN9P43378 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
PTPN9P43378 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 AC012497.1-201ENST00000429392 575 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 RPS18P1-201ENST00000447840 458 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.64□□□□□ -1.35
PTPN9P43378 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.64□□□□□ -1.35
PTPN9P43378 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.64□□□□□ -1.35
PTPN9P43378 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 AC135983.3-201ENST00000528049 1226 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC6.64□□□□□ -1.35
PTPN9P43378 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.64□□□□□ -1.35
PTPN9P43378 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.64□□□□□ -1.35
PTPN9P43378 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.64□□□□□ -1.35
PTPN9P43378 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC6.64□□□□□ -1.35
PTPN9P43378 AL589765.6-201ENST00000601909 549 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 AC024589.2-201ENST00000605642 1294 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 SNORA74.4-201ENST00000607595 199 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 AP001885.1-201ENST00000621658 558 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC6.64□□□□□ -1.35
PTPN9P43378 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 BIN2P1-201ENST00000504996 1530 ntBASIC6.64□□□□□ -1.35
PTPN9P43378 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
PTPN9P43378 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
PTPN9P43378 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.64□□□□□ -1.35
PTPN9P43378 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.64□□□□□ -1.35
PTPN9P43378 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 SNORD8-201ENST00000363915 110 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 SNORA64.3-201ENST00000365647 134 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AP003170.5-201ENST00000397185 335 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.63□□□□□ -1.35
PTPN9P43378 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 DHFRP2-201ENST00000414224 547 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.63□□□□□ -1.35
PTPN9P43378 EMC3-AS1-205ENST00000438698 534 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 ARMC4P1-201ENST00000438905 707 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.63□□□□□ -1.35
PTPN9P43378 GTF2IP14-201ENST00000441415 586 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AL356121.1-201ENST00000442911 156 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC092967.1-201ENST00000449016 481 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.63□□□□□ -1.35
PTPN9P43378 RBMY2HP-201ENST00000457961 720 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 OR9A1P-202ENST00000484361 945 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 RN7SL714P-201ENST00000487050 298 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.63□□□□□ -1.35
PTPN9P43378 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC093816.1-201ENST00000515076 913 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AC138517.1-201ENST00000515724 568 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC6.63□□□□□ -1.35
PTPN9P43378 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.63□□□□□ -1.35
PTPN9P43378 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC005332.4-201ENST00000592752 579 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.63□□□□□ -1.35
PTPN9P43378 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.63□□□□□ -1.35
PTPN9P43378 AC089999.3-201ENST00000622440 577 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 AC004836.1-201ENST00000623032 634 ntBASIC6.63□□□□□ -1.35
PTPN9P43378 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
PTPN9P43378 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.63□□□□□ -1.35
PTPN9P43378 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms