Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.780-201ENST00000617336 101 ntBASIC7.53□□□□□ -1.2
MSX1P28360 Y_RNA.801-201ENST00000619005 101 ntBASIC7.53□□□□□ -1.2
MSX1P28360 Metazoa_SRP.146-201ENST00000619409 286 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AC018816.2-201ENST00000621460 353 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AC010338.1-201ENST00000621823 717 ntBASIC7.53□□□□□ -1.2
MSX1P28360 STXBP5L-205ENST00000472879 3067 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 AC106800.1-201ENST00000501221 1362 ntBASIC7.53□□□□□ -1.2
MSX1P28360 TM2D2-203ENST00000456845 3295 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 FAM107A-202ENST00000394481 3465 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 UTP23-201ENST00000309822 3699 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 YME1L1-201ENST00000326799 3994 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 NCEH1-206ENST00000543711 4062 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 FCGR3B-209ENST00000614870 1993 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AC137056.2-201ENST00000624055 1958 ntBASIC7.53□□□□□ -1.2
MSX1P28360 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 AL954650.1-201ENST00000430776 2051 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 SCYL2-211ENST00000635101 3948 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 TLR1-202ENST00000502213 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 HMGCR-202ENST00000343975 3681 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC7.52□□□□□ -1.2
MSX1P28360 AC092979.1-201ENST00000488190 1414 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
MSX1P28360 C12orf77-202ENST00000549262 1443 ntTSL 4 BASIC7.52□□□□□ -1.2
MSX1P28360 CCRL2-204ENST00000400882 1642 ntAPPRIS P1 BASIC7.52□□□□□ -1.2
MSX1P28360 PABPC1P9-201ENST00000426076 1612 ntBASIC7.52□□□□□ -1.2
MSX1P28360 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.2
MSX1P28360 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
MSX1P28360 LY75-CD302-201ENST00000504764 5650 ntAPPRIS P4 TSL 2 BASIC7.52□□□□□ -1.2
MSX1P28360 ZNF207-202ENST00000342555 1905 ntTSL 5 BASIC7.52□□□□□ -1.2
MSX1P28360 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
MSX1P28360 CDY1B-202ENST00000382407 2227 ntAPPRIS P1 BASIC7.52□□□□□ -1.2
MSX1P28360 AC008985.1-201ENST00000624169 2239 ntBASIC7.52□□□□□ -1.2
MSX1P28360 ARHGAP42P5-201ENST00000548856 2936 ntBASIC7.52□□□□□ -1.21
MSX1P28360 C9orf72-206ENST00000619707 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 WDPCP-206ENST00000409562 3544 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 AC009108.3-201ENST00000602739 3515 ntBASIC7.52□□□□□ -1.21
MSX1P28360 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 ZNF655-213ENST00000425063 4624 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 XIRP2-206ENST00000409728 3391 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 AC008537.3-201ENST00000623128 1881 ntBASIC7.52□□□□□ -1.21
MSX1P28360 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 FCAR-201ENST00000345937 608 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 SNORA73A-201ENST00000364938 206 ntBASIC7.52□□□□□ -1.21
MSX1P28360 LEMD1-201ENST00000367149 604 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC7.52□□□□□ -1.21
MSX1P28360 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
MSX1P28360 TRAJ24-201ENST00000390513 63 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
MSX1P28360 VN2R17P-201ENST00000391712 832 ntBASIC7.52□□□□□ -1.21
MSX1P28360 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 TMEM199-202ENST00000395404 971 ntTSL 5 BASIC7.52□□□□□ -1.21
MSX1P28360 RPL31P1-201ENST00000398116 372 ntBASIC7.52□□□□□ -1.21
MSX1P28360 RPS3AP23-201ENST00000401762 784 ntBASIC7.52□□□□□ -1.21
MSX1P28360 RPS7-204ENST00000407445 833 ntTSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 ELOBP4-201ENST00000423418 296 ntBASIC7.52□□□□□ -1.21
MSX1P28360 RPSAP32-201ENST00000432681 526 ntBASIC7.52□□□□□ -1.21
MSX1P28360 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 ARMC4P1-201ENST00000438905 707 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC7.52□□□□□ -1.21
MSX1P28360 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC7.52□□□□□ -1.21
MSX1P28360 RPL5P17-201ENST00000469685 877 ntBASIC7.52□□□□□ -1.21
MSX1P28360 RN7SL65P-201ENST00000485221 315 ntBASIC7.52□□□□□ -1.21
MSX1P28360 RPS4XP15-201ENST00000489210 795 ntBASIC7.52□□□□□ -1.21
MSX1P28360 HMGN1P12-201ENST00000499125 195 ntBASIC7.52□□□□□ -1.21
MSX1P28360 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC7.52□□□□□ -1.21
MSX1P28360 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC021001.1-201ENST00000518703 987 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC7.52□□□□□ -1.21
MSX1P28360 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC104031.1-201ENST00000527726 372 ntTSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 PRPSAP2-217ENST00000542013 1047 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC243972.1-201ENST00000542992 570 ntTSL 4 BASIC7.52□□□□□ -1.21
MSX1P28360 AC092747.2-201ENST00000545069 983 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC034105.2-201ENST00000561866 238 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AC136944.5-201ENST00000573021 151 ntBASIC7.52□□□□□ -1.21
MSX1P28360 EIF4A1P9-201ENST00000576035 1207 ntBASIC7.52□□□□□ -1.21
MSX1P28360 RN7SL311P-201ENST00000579858 306 ntBASIC7.52□□□□□ -1.21
MSX1P28360 MIR4258-201ENST00000580920 91 ntBASIC7.52□□□□□ -1.21
MSX1P28360 MIR548AB-201ENST00000584917 84 ntBASIC7.52□□□□□ -1.21
MSX1P28360 ZNF585B-207ENST00000586320 403 ntTSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 AC087645.1-201ENST00000588528 291 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 AL358394.3-202ENST00000599308 832 ntTSL 5 BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms