Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.61□□□□□ -1.19
COL5A3P25940 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
COL5A3P25940 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC7.61□□□□□ -1.19
COL5A3P25940 AL136981.1-203ENST00000451452 3844 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC7.61□□□□□ -1.19
COL5A3P25940 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC7.61□□□□□ -1.19
COL5A3P25940 DUTP7-201ENST00000507982 486 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 OR7E158P-201ENST00000524483 910 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC7.61□□□□□ -1.19
COL5A3P25940 TXNP4-201ENST00000575018 310 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 AP001496.3-201ENST00000580230 913 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 AL049840.6-201ENST00000604583 345 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 AL136295.6-201ENST00000610486 658 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 AC087565.3-203ENST00000641018 837 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 CASC19-222ENST00000641321 1173 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC7.61□□□□□ -1.19
COL5A3P25940 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL5A3P25940 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.6□□□□□ -1.19
COL5A3P25940 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL5A3P25940 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL5A3P25940 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.6□□□□□ -1.19
COL5A3P25940 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
COL5A3P25940 AL359091.1-201ENST00000449048 1734 ntBASIC7.6□□□□□ -1.19
COL5A3P25940 AL049634.1-201ENST00000453770 1720 ntBASIC7.6□□□□□ -1.19
COL5A3P25940 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC7.6□□□□□ -1.19
COL5A3P25940 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC7.6□□□□□ -1.19
COL5A3P25940 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.6□□□□□ -1.19
COL5A3P25940 AL163193.1-201ENST00000444895 788 ntBASIC7.6□□□□□ -1.19
COL5A3P25940 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
COL5A3P25940 RPS17P15-201ENST00000475609 349 ntBASIC7.6□□□□□ -1.19
COL5A3P25940 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.6□□□□□ -1.19
COL5A3P25940 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.6□□□□□ -1.19
COL5A3P25940 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7.6□□□□□ -1.19
COL5A3P25940 AC068870.2-201ENST00000620635 389 ntBASIC7.6□□□□□ -1.19
COL5A3P25940 AL691477.1-201ENST00000624398 162 ntBASIC7.6□□□□□ -1.19
COL5A3P25940 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.6□□□□□ -1.19
COL5A3P25940 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7.6□□□□□ -1.19
COL5A3P25940 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.6□□□□□ -1.19
COL5A3P25940 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
COL5A3P25940 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
COL5A3P25940 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL5A3P25940 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
COL5A3P25940 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL5A3P25940 MROH3P-201ENST00000435735 2676 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.59□□□□□ -1.19
COL5A3P25940 RNA5SP478-201ENST00000364657 115 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 SNRPEP6-201ENST00000407465 277 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
COL5A3P25940 Z84478.1-201ENST00000438230 1219 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 AL390119.1-201ENST00000440329 312 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.59□□□□□ -1.19
COL5A3P25940 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.59□□□□□ -1.19
COL5A3P25940 AP005639.1-201ENST00000526939 192 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC7.59□□□□□ -1.19
COL5A3P25940 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.59□□□□□ -1.19
COL5A3P25940 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC7.59□□□□□ -1.19
COL5A3P25940 MIR4505-201ENST00000582238 73 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL5A3P25940 SNORD91A-202ENST00000609620 191 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 OR11H2-202ENST00000641517 1085 ntBASIC7.59□□□□□ -1.19
COL5A3P25940 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
COL5A3P25940 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
COL5A3P25940 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
COL5A3P25940 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
COL5A3P25940 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC7.59□□□□□ -1.19
COL5A3P25940 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
COL5A3P25940 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.59□□□□□ -1.19
COL5A3P25940 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC7.59□□□□□ -1.2
COL5A3P25940 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL5A3P25940 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 SELENOWP1-201ENST00000322792 252 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 OR10R3P-201ENST00000361688 942 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AL022331.1-201ENST00000429025 477 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AC012075.1-201ENST00000436549 580 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 RN7SL826P-201ENST00000479724 288 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 RN7SL57P-201ENST00000493687 290 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.58□□□□□ -1.2
COL5A3P25940 AC008536.1-201ENST00000602872 669 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 FO393422.1-201ENST00000603908 708 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.58□□□□□ -1.2
COL5A3P25940 AL445647.2-201ENST00000615170 130 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 MIR193BHG-214ENST00000641765 509 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AC096921.2-201ENST00000561507 1916 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.58□□□□□ -1.2
COL5A3P25940 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL5A3P25940 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 MAPK10-338ENST00000641647 3362 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 FO393409.1-201ENST00000399325 1372 ntBASIC7.58□□□□□ -1.2
COL5A3P25940 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL5A3P25940 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
COL5A3P25940 EML5-201ENST00000380664 5910 ntTSL 5 BASIC7.58□□□□□ -1.2
COL5A3P25940 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.58□□□□□ -1.2
COL5A3P25940 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC7.58□□□□□ -1.2
COL5A3P25940 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 442.3 ms