Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC073365.1-203ENST00000641055 1992 ntBASIC7.99□□□□□ -1.13
CCDC39Q9UFE4 AC089998.1-201ENST00000548575 3141 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 RNF145-211ENST00000521606 2658 ntTSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 DDX43P1-201ENST00000510713 1763 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 RNU6-304P-201ENST00000364855 107 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 MIR152-201ENST00000385212 87 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC090114.1-201ENST00000393266 448 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 RN7SKP236-201ENST00000410635 284 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 NIP7P1-201ENST00000433227 512 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 MTCYBP39-201ENST00000437562 491 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC114755.1-201ENST00000453101 868 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC018475.1-201ENST00000478358 465 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 TDGP1-201ENST00000543961 1229 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 VDAC2P2-201ENST00000544463 901 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 TGFB3-AS1-201ENST00000553732 580 ntTSL 4 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL031846.1-201ENST00000560933 314 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 FRG2IP-201ENST00000563581 781 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC005632.2-201ENST00000564271 828 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 Z99497.2-201ENST00000603634 310 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL031775.1-201ENST00000607014 887 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC016542.3-201ENST00000623520 619 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC073263.3-201ENST00000624449 858 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AL049541.2-201ENST00000626377 555 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 TPTE2P2-201ENST00000403471 1466 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC119674.1-204ENST00000641348 1343 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 AC100810.3-201ENST00000633189 2240 ntBASIC7.98□□□□□ -1.13
CCDC39Q9UFE4 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TMCC1P1-201ENST00000518897 1980 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TATDN2P3-201ENST00000452855 3665 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 RN7SKP149-201ENST00000363008 344 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 RNU6-623P-201ENST00000363143 105 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 RNA5SP172-201ENST00000365061 118 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 RPSAP44-201ENST00000406712 884 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 RNU2-5P-201ENST00000410533 180 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TRIM60P17-201ENST00000415181 719 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AL451136.1-201ENST00000435399 325 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TRIM60P9Y-201ENST00000438459 816 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 MTCYBP21-201ENST00000443300 1113 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TRIM60P11Y-201ENST00000445313 801 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 LAPTM4BP1-201ENST00000447781 690 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC7.97□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms