Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 RNA5SP188-201ENST00000362916 129 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AL589994.1-201ENST00000404962 340 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 RPL21P50-201ENST00000417698 477 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AL354707.3-201ENST00000427308 331 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 MTCO1P57-201ENST00000432182 261 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 DNAJA1P5-201ENST00000440278 943 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 PMS2P9-201ENST00000441237 515 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 CXCR2P1-202ENST00000443392 1074 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AP002453.1-201ENST00000492327 668 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 RPL5P14-201ENST00000494197 878 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC090115.2-201ENST00000548060 883 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC005014.3-201ENST00000605985 190 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC092574.1-201ENST00000609771 420 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AL365181.4-201ENST00000609800 547 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 PCA3_2.1-201ENST00000612507 409 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC018692.2-201ENST00000624130 348 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC073488.6-201ENST00000632293 754 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 LINC02495-203ENST00000636704 242 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 AC092821.2-201ENST00000545710 2042 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 NCOA4P3-201ENST00000513203 1877 ntBASIC6.58□□□□□ -1.36
HMGB4Q8WW32 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGB4Q8WW32 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 RNU6-386P-201ENST00000362650 107 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 RNA5SP435-201ENST00000364044 108 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AL049697.3-201ENST00000406493 982 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC009500.1-201ENST00000420684 583 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 DUTP4-201ENST00000424782 475 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AL590623.1-201ENST00000427864 105 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 MTCO3P43-201ENST00000440974 771 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 RPL31P53-201ENST00000457065 348 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 RPL37AP8-201ENST00000494116 276 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 SNX18P24-201ENST00000505249 671 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 PABPC1P1-201ENST00000506347 591 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 OR4A42P-201ENST00000531397 938 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC008055.1-201ENST00000547032 609 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC107993.1-201ENST00000591343 684 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 MIR6085-201ENST00000618314 110 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AP000577.1-201ENST00000624366 878 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AKAP17BP-201ENST00000431706 2719 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HMGB4Q8WW32 AC127070.3-201ENST00000503695 3263 ntBASIC6.57□□□□□ -1.36
HMGB4Q8WW32 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms